miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 153295 0.7 0.754006
Target:  5'- gACGUCCGaCGCCGGcGUucaucuCGACGCGc- -3'
miRNA:   3'- aUGUAGGC-GCGGCU-CAu-----GCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 226032 0.7 0.754006
Target:  5'- gACGUCCGCuCCGucUACGACuGCGAc -3'
miRNA:   3'- aUGUAGGCGcGGCucAUGCUG-CGCUu -5'
9073 3' -56.6 NC_002512.2 + 154702 0.7 0.754006
Target:  5'- -cCGUCCgGCGUCGA--GCGGCGCGAc -3'
miRNA:   3'- auGUAGG-CGCGGCUcaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 216816 0.7 0.754006
Target:  5'- gGCGUCgCGgGUCGGGUACGGCuGCGu- -3'
miRNA:   3'- aUGUAG-GCgCGGCUCAUGCUG-CGCuu -5'
9073 3' -56.6 NC_002512.2 + 224343 0.7 0.77256
Target:  5'- cGCGgcgCCGCGCCGGGgucGCgGGCGgGAGa -3'
miRNA:   3'- aUGUa--GGCGCGGCUCa--UG-CUGCgCUU- -5'
9073 3' -56.6 NC_002512.2 + 213925 0.7 0.781661
Target:  5'- ----aCCGCGgCGAGUGCGACGUc-- -3'
miRNA:   3'- auguaGGCGCgGCUCAUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 124749 0.7 0.781661
Target:  5'- cGCGUCCGU--CGGGUGCGGCGaCGAc -3'
miRNA:   3'- aUGUAGGCGcgGCUCAUGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 210490 0.69 0.790634
Target:  5'- aGCAgaUCCGCGaggCGAGggccCGACGCGAGc -3'
miRNA:   3'- aUGU--AGGCGCg--GCUCau--GCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 176399 0.69 0.790634
Target:  5'- -uCGUCCGCGCCGcGU-CGugGCa-- -3'
miRNA:   3'- auGUAGGCGCGGCuCAuGCugCGcuu -5'
9073 3' -56.6 NC_002512.2 + 67977 0.69 0.790634
Target:  5'- gGCGUCCGC-CgGAGgagggcCGGCGCGAGg -3'
miRNA:   3'- aUGUAGGCGcGgCUCau----GCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 115587 0.69 0.790634
Target:  5'- aGCAcCUGCGCCGGGUguacaagaacACGgACGCGGc -3'
miRNA:   3'- aUGUaGGCGCGGCUCA----------UGC-UGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 191667 0.69 0.799471
Target:  5'- gACGUCCGCGucCCGGGgcuggGCGAC-CGGAc -3'
miRNA:   3'- aUGUAGGCGC--GGCUCa----UGCUGcGCUU- -5'
9073 3' -56.6 NC_002512.2 + 121045 0.69 0.808162
Target:  5'- gACcUCUGgGCCGGGUACccgccgcccgaGGCGCGGAg -3'
miRNA:   3'- aUGuAGGCgCGGCUCAUG-----------CUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 17054 0.69 0.816701
Target:  5'- gGCGcCCGCGCCcaaccccgGCGGCGCGGAa -3'
miRNA:   3'- aUGUaGGCGCGGcuca----UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 170755 0.69 0.816701
Target:  5'- gACAUCCuCGCCGGG-AUGgaGCGCGAc -3'
miRNA:   3'- aUGUAGGcGCGGCUCaUGC--UGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 172571 0.69 0.82425
Target:  5'- gACGuuccUCCGCGCCcgcGAGUACGAgaccggcUGCGAc -3'
miRNA:   3'- aUGU----AGGCGCGG---CUCAUGCU-------GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 126204 0.69 0.833291
Target:  5'- cGCGUCCGcCGCCcucUGCGACGuCGAGg -3'
miRNA:   3'- aUGUAGGC-GCGGcucAUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 6621 0.69 0.833291
Target:  5'- gGCGUCC-CGCCccccgACGACGCGGAc -3'
miRNA:   3'- aUGUAGGcGCGGcuca-UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 110781 0.68 0.840532
Target:  5'- cGCAgCUGCGCCGAGgcCGcccgcaccuccucGCGCGAc -3'
miRNA:   3'- aUGUaGGCGCGGCUCauGC-------------UGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 81799 0.68 0.841328
Target:  5'- cGCcgCCGcCGCCGGGggacggACGAcCGCGGc -3'
miRNA:   3'- aUGuaGGC-GCGGCUCa-----UGCU-GCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.