miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 72184 0.67 0.885515
Target:  5'- aGCAgCC-CGCCGAGgcgaaGGCGCGGAa -3'
miRNA:   3'- aUGUaGGcGCGGCUCaug--CUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 75544 0.67 0.892158
Target:  5'- gACG-CCGUgGCgGAGgacgACGACGCGGAc -3'
miRNA:   3'- aUGUaGGCG-CGgCUCa---UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 80651 0.66 0.925774
Target:  5'- gGCggCgGCGCCGGGUccgucggucccgcgGCGGCgGCGAc -3'
miRNA:   3'- aUGuaGgCGCGGCUCA--------------UGCUG-CGCUu -5'
9073 3' -56.6 NC_002512.2 + 81799 0.68 0.841328
Target:  5'- cGCcgCCGcCGCCGGGggacggACGAcCGCGGc -3'
miRNA:   3'- aUGuaGGC-GCGGCUCa-----UGCU-GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 82700 0.66 0.941861
Target:  5'- gGCGUCCGUGC-----GCGGCGCGGg -3'
miRNA:   3'- aUGUAGGCGCGgcucaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 86657 0.71 0.715734
Target:  5'- cGCGguggCCGCGuCCGAGcggACGGCGCGc- -3'
miRNA:   3'- aUGUa---GGCGC-GGCUCa--UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 90490 0.66 0.941861
Target:  5'- gGCGUCCucgacgggaucgGgGCCGAGgcCGGCgGCGGAc -3'
miRNA:   3'- aUGUAGG------------CgCGGCUCauGCUG-CGCUU- -5'
9073 3' -56.6 NC_002512.2 + 90626 0.66 0.927339
Target:  5'- -----gCGCGCCGG--GCGGCGCGAc -3'
miRNA:   3'- auguagGCGCGGCUcaUGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 90919 0.66 0.941861
Target:  5'- gGCggCCGCGaaCGGGgcCGGCGCGGc -3'
miRNA:   3'- aUGuaGGCGCg-GCUCauGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 91878 0.67 0.904785
Target:  5'- -cCGUCCG-GCgCGGGcgGCGGCGCGGc -3'
miRNA:   3'- auGUAGGCgCG-GCUCa-UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 94620 0.66 0.916517
Target:  5'- gGCGgcccaggCCuCGUCGAGcGCGGCGCGGAc -3'
miRNA:   3'- aUGUa------GGcGCGGCUCaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 96460 0.68 0.849182
Target:  5'- -cCGUCCGCGuCCGGGUuuuuCGucCGCGGGg -3'
miRNA:   3'- auGUAGGCGC-GGCUCAu---GCu-GCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 103051 0.66 0.927339
Target:  5'- gACGaCCGCGaCGAGcGCGACGaCGGGa -3'
miRNA:   3'- aUGUaGGCGCgGCUCaUGCUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 103395 0.67 0.904785
Target:  5'- cGCGcCCaaCGCCGGGgauccggGCGACGCGAc -3'
miRNA:   3'- aUGUaGGc-GCGGCUCa------UGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 104870 0.66 0.941861
Target:  5'- cGCAgcgggCgGCGCCGA---CGGCGCGAc -3'
miRNA:   3'- aUGUa----GgCGCGGCUcauGCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 106345 0.74 0.556891
Target:  5'- gACGUCCGCGCCcgccgacucgGAGUACcaGACGaCGAGg -3'
miRNA:   3'- aUGUAGGCGCGG----------CUCAUG--CUGC-GCUU- -5'
9073 3' -56.6 NC_002512.2 + 107787 0.66 0.941861
Target:  5'- gACGUCaGCGCCGAccucgcGUcCGGCGCGu- -3'
miRNA:   3'- aUGUAGgCGCGGCU------CAuGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 108121 0.68 0.878659
Target:  5'- gGCgGUCCGCGgucCCGAGagGCG-CGCGAAg -3'
miRNA:   3'- aUG-UAGGCGC---GGCUCa-UGCuGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 110767 0.67 0.885515
Target:  5'- gGCGUgaucCCGCGCCG-GUacACGACGCc-- -3'
miRNA:   3'- aUGUA----GGCGCGGCuCA--UGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 110781 0.68 0.840532
Target:  5'- cGCAgCUGCGCCGAGgcCGcccgcaccuccucGCGCGAc -3'
miRNA:   3'- aUGUaGGCGCGGCUCauGC-------------UGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.