miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 3' -56.6 NC_002512.2 + 228052 0.66 0.941861
Target:  5'- gACGcCCGCGgaCGGcUGCGGCGCGGGa -3'
miRNA:   3'- aUGUaGGCGCg-GCUcAUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 226989 0.67 0.892157
Target:  5'- gGCGUCUuaGCagaGGGUgagGCGGCGCGAGc -3'
miRNA:   3'- aUGUAGGcgCGg--CUCA---UGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 226753 0.67 0.892158
Target:  5'- gGC-UCCG-GCCGG--ACGACGCGGAg -3'
miRNA:   3'- aUGuAGGCgCGGCUcaUGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 226192 0.66 0.941861
Target:  5'- gACggCCGCGCCGuuaGCG-CGCGGc -3'
miRNA:   3'- aUGuaGGCGCGGCucaUGCuGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 226032 0.7 0.754006
Target:  5'- gACGUCCGCuCCGucUACGACuGCGAc -3'
miRNA:   3'- aUGUAGGCGcGGCucAUGCUG-CGCUu -5'
9073 3' -56.6 NC_002512.2 + 224798 0.67 0.910764
Target:  5'- ----cCCGCGCCGAcgccgGCGACGaCGAc -3'
miRNA:   3'- auguaGGCGCGGCUca---UGCUGC-GCUu -5'
9073 3' -56.6 NC_002512.2 + 224343 0.7 0.77256
Target:  5'- cGCGgcgCCGCGCCGGGgucGCgGGCGgGAGa -3'
miRNA:   3'- aUGUa--GGCGCGGCUCa--UG-CUGCgCUU- -5'
9073 3' -56.6 NC_002512.2 + 224140 0.67 0.885515
Target:  5'- ----cCCGCGCCGGGagGCGgACGCGu- -3'
miRNA:   3'- auguaGGCGCGGCUCa-UGC-UGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 223260 0.66 0.916517
Target:  5'- gGCGUCCGCGUCGucggGgGGCGgGAc -3'
miRNA:   3'- aUGUAGGCGCGGCuca-UgCUGCgCUu -5'
9073 3' -56.6 NC_002512.2 + 219116 0.66 0.937248
Target:  5'- cUACGccuaCCGCGgCGGGgccgACGACGCGc- -3'
miRNA:   3'- -AUGUa---GGCGCgGCUCa---UGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 218504 0.67 0.913092
Target:  5'- cGCGUCCGaGCCGucggaccccucgucGUcCGACGCGAAc -3'
miRNA:   3'- aUGUAGGCgCGGCu-------------CAuGCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 216816 0.7 0.754006
Target:  5'- gGCGUCgCGgGUCGGGUACGGCuGCGu- -3'
miRNA:   3'- aUGUAG-GCgCGGCUCAUGCUG-CGCuu -5'
9073 3' -56.6 NC_002512.2 + 213925 0.7 0.781661
Target:  5'- ----aCCGCGgCGAGUGCGACGUc-- -3'
miRNA:   3'- auguaGGCGCgGCUCAUGCUGCGcuu -5'
9073 3' -56.6 NC_002512.2 + 212825 0.76 0.45307
Target:  5'- ---uUCCGCGCCGccggGGUugGGCGCGGg -3'
miRNA:   3'- auguAGGCGCGGC----UCAugCUGCGCUu -5'
9073 3' -56.6 NC_002512.2 + 212076 0.68 0.878659
Target:  5'- gGCAUCCGcCGCCu-GUACGACGa--- -3'
miRNA:   3'- aUGUAGGC-GCGGcuCAUGCUGCgcuu -5'
9073 3' -56.6 NC_002512.2 + 211284 0.75 0.489725
Target:  5'- uUGCGagUGCGCCGAGUGCGGCauGCGGc -3'
miRNA:   3'- -AUGUagGCGCGGCUCAUGCUG--CGCUu -5'
9073 3' -56.6 NC_002512.2 + 210490 0.69 0.790634
Target:  5'- aGCAgaUCCGCGaggCGAGggccCGACGCGAGc -3'
miRNA:   3'- aUGU--AGGCGCg--GCUCau--GCUGCGCUU- -5'
9073 3' -56.6 NC_002512.2 + 208568 0.67 0.904785
Target:  5'- gUGCGUCaG-GCCGAGU-CGACGCGc- -3'
miRNA:   3'- -AUGUAGgCgCGGCUCAuGCUGCGCuu -5'
9073 3' -56.6 NC_002512.2 + 205038 0.67 0.898582
Target:  5'- cGCGUCCGcCGCCGAc--CGGcCGCGGg -3'
miRNA:   3'- aUGUAGGC-GCGGCUcauGCU-GCGCUu -5'
9073 3' -56.6 NC_002512.2 + 200790 0.68 0.849182
Target:  5'- gGCcgCCGcCGCCGAagACGAgGCGGGa -3'
miRNA:   3'- aUGuaGGC-GCGGCUcaUGCUgCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.