miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 146080 0.68 0.685491
Target:  5'- --cGC-CGCcgcCGGCGCGCCCgacGCGg -3'
miRNA:   3'- ccaCGuGCGcaaGCCGCGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 174210 0.68 0.676001
Target:  5'- --aGCgGCGCGUUCaGCGCcccGCCCgGCGu -3'
miRNA:   3'- ccaCG-UGCGCAAGcCGCG---CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 45069 0.68 0.676001
Target:  5'- aGGUGU-CGCGgcCGGCGCGgaagggucuCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGCCGCGC---------GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 102460 0.68 0.676001
Target:  5'- --gGCGuCGCGgaggagGGCGCGCCCgucGCGg -3'
miRNA:   3'- ccaCGU-GCGCaag---CCGCGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 151103 0.69 0.666479
Target:  5'- cGUGCACGUGUcUCGGgGCGCg--GUGg -3'
miRNA:   3'- cCACGUGCGCA-AGCCgCGCGggaCGC- -5'
9073 5' -60.9 NC_002512.2 + 113673 0.69 0.656933
Target:  5'- gGGUGCGCGCGggUCGGacguugGCGCCgaagaGCa -3'
miRNA:   3'- -CCACGUGCGCa-AGCCg-----CGCGGga---CGc -5'
9073 5' -60.9 NC_002512.2 + 199979 0.69 0.656933
Target:  5'- --cGC-CGCG-UCcGCGCGCCCgGCGg -3'
miRNA:   3'- ccaCGuGCGCaAGcCGCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 29886 0.69 0.651197
Target:  5'- cGGUGCACGUGggCcgcucguccccgccgGGCGCGCggaCgcgGCGg -3'
miRNA:   3'- -CCACGUGCGCaaG---------------CCGCGCGg--Ga--CGC- -5'
9073 5' -60.9 NC_002512.2 + 166850 0.69 0.64737
Target:  5'- gGGaGCACGUc--CGGCGCuCCCUGCu -3'
miRNA:   3'- -CCaCGUGCGcaaGCCGCGcGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 124872 0.69 0.64737
Target:  5'- -cUGCGCGgGgcUCGaCGCGCCCgUGCGg -3'
miRNA:   3'- ccACGUGCgCa-AGCcGCGCGGG-ACGC- -5'
9073 5' -60.9 NC_002512.2 + 149166 0.69 0.637796
Target:  5'- cGGUGCcgccCGCGggCccGCGCGCCCUcGCc -3'
miRNA:   3'- -CCACGu---GCGCaaGc-CGCGCGGGA-CGc -5'
9073 5' -60.9 NC_002512.2 + 50017 0.69 0.628218
Target:  5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3'
miRNA:   3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 103536 0.69 0.626302
Target:  5'- cGUGaACGCG-UCGuGCGCGCCCgucccggacgcgGCGg -3'
miRNA:   3'- cCACgUGCGCaAGC-CGCGCGGGa-----------CGC- -5'
9073 5' -60.9 NC_002512.2 + 99097 0.69 0.618643
Target:  5'- cGUGCuGCGCG-UCGGCG-GCCCUccucGUGg -3'
miRNA:   3'- cCACG-UGCGCaAGCCGCgCGGGA----CGC- -5'
9073 5' -60.9 NC_002512.2 + 108991 0.69 0.618643
Target:  5'- cGUGUACcugcucgucgGCGccggCGGCGuCGUCCUGCGg -3'
miRNA:   3'- cCACGUG----------CGCaa--GCCGC-GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 94669 0.69 0.618643
Target:  5'- cGGUcgGCACGCucucCGGCGCGCagCUGCc -3'
miRNA:   3'- -CCA--CGUGCGcaa-GCCGCGCGg-GACGc -5'
9073 5' -60.9 NC_002512.2 + 12922 0.7 0.599525
Target:  5'- aGUGCGCccggGCGUUCcGCGCGaagaaCCUGCu -3'
miRNA:   3'- cCACGUG----CGCAAGcCGCGCg----GGACGc -5'
9073 5' -60.9 NC_002512.2 + 188908 0.7 0.599525
Target:  5'- aGGUGCGCGCGcggUCGGagaGU-CCCggugGCGg -3'
miRNA:   3'- -CCACGUGCGCa--AGCCg--CGcGGGa---CGC- -5'
9073 5' -60.9 NC_002512.2 + 106237 0.7 0.589995
Target:  5'- --cGCGCGCGggaaccgCGGCGCGCUCUcccCGg -3'
miRNA:   3'- ccaCGUGCGCaa-----GCCGCGCGGGAc--GC- -5'
9073 5' -60.9 NC_002512.2 + 95540 0.7 0.58429
Target:  5'- cGGUGCGggucuggagcucggcCGCGgcgaguccgUCGGCGCcgGCCCcgGCGa -3'
miRNA:   3'- -CCACGU---------------GCGCa--------AGCCGCG--CGGGa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.