miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 135092 0.67 0.76827
Target:  5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3'
miRNA:   3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 137096 0.67 0.76827
Target:  5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3'
miRNA:   3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 22949 0.67 0.759397
Target:  5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3'
miRNA:   3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 90098 0.67 0.750424
Target:  5'- cGUGUGCGUGUaugucuucuggaUCGcGgGCGCCCggUGCGc -3'
miRNA:   3'- cCACGUGCGCA------------AGC-CgCGCGGG--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 101584 0.67 0.741361
Target:  5'- aGGUGC-CGCGacUCgGGCGUGCaCCcGCa -3'
miRNA:   3'- -CCACGuGCGCa-AG-CCGCGCG-GGaCGc -5'
9073 5' -60.9 NC_002512.2 + 99617 0.67 0.741361
Target:  5'- cGUGUACGUGaugcCGGC-CGCCCUGa- -3'
miRNA:   3'- cCACGUGCGCaa--GCCGcGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 124644 0.67 0.741361
Target:  5'- gGGUGCGCG-GcgCGGCGCucacgcuguacGCCUUcGCGc -3'
miRNA:   3'- -CCACGUGCgCaaGCCGCG-----------CGGGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 80814 0.67 0.741361
Target:  5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3'
miRNA:   3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 125207 0.67 0.738626
Target:  5'- cGGUcGCGCGUGUcgucgUCGGUccggucuuuauuucGCGCCCUcguucGCGc -3'
miRNA:   3'- -CCA-CGUGCGCA-----AGCCG--------------CGCGGGA-----CGC- -5'
9073 5' -60.9 NC_002512.2 + 54613 0.67 0.735883
Target:  5'- cGUGUACGCGgcCGccagcuacccgccgaGCGCGgCCCUGgCGa -3'
miRNA:   3'- cCACGUGCGCaaGC---------------CGCGC-GGGAC-GC- -5'
9073 5' -60.9 NC_002512.2 + 136586 0.67 0.732214
Target:  5'- cGGUGCgcggguuggACGCGUacagguagCGGgcCGCGCCCUccaGCGu -3'
miRNA:   3'- -CCACG---------UGCGCAa-------GCC--GCGCGGGA---CGC- -5'
9073 5' -60.9 NC_002512.2 + 221478 0.67 0.731295
Target:  5'- cGGUGCGCguuccugGCGcUCGGCGUccuauuuUCCUGCGc -3'
miRNA:   3'- -CCACGUG-------CGCaAGCCGCGc------GGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 193321 0.68 0.704348
Target:  5'- --cGC-CGC-UUCGGCGCGUucaUCUGCGg -3'
miRNA:   3'- ccaCGuGCGcAAGCCGCGCG---GGACGC- -5'
9073 5' -60.9 NC_002512.2 + 133576 0.68 0.694942
Target:  5'- cGUGCG-GCGacCGGCcCGCCCgcgGCGg -3'
miRNA:   3'- cCACGUgCGCaaGCCGcGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 202417 0.68 0.694942
Target:  5'- --cGCGCGCGgaacagUGGCGUGaCCC-GCGg -3'
miRNA:   3'- ccaCGUGCGCaa----GCCGCGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 169519 0.68 0.692111
Target:  5'- aGGUGUACGCGUccagcucgaacgggUccCGGC-UGCCCgGCGg -3'
miRNA:   3'- -CCACGUGCGCA--------------A--GCCGcGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 4446 0.68 0.685491
Target:  5'- gGGUGCcggGCGCGggggUCGGCGUcgGCCCc--- -3'
miRNA:   3'- -CCACG---UGCGCa---AGCCGCG--CGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 92970 0.68 0.685491
Target:  5'- gGGUGUACGUGUgguugugaUCGGCGaaccaccagagGCCC-GCGa -3'
miRNA:   3'- -CCACGUGCGCA--------AGCCGCg----------CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 114798 0.68 0.685491
Target:  5'- -cUGCACGCGggUGGCcagGCGCCgC-GCGa -3'
miRNA:   3'- ccACGUGCGCaaGCCG---CGCGG-GaCGC- -5'
9073 5' -60.9 NC_002512.2 + 128301 0.68 0.685491
Target:  5'- gGGUGCACGCccgaGUcgCGGCaccUGCUCUGCu -3'
miRNA:   3'- -CCACGUGCG----CAa-GCCGc--GCGGGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.