miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 218885 0.66 0.80263
Target:  5'- cGUGCGCGCccUCaucGCGCGCCaCgcgggGCGg -3'
miRNA:   3'- cCACGUGCGcaAGc--CGCGCGG-Ga----CGC- -5'
9073 5' -60.9 NC_002512.2 + 190950 0.66 0.800959
Target:  5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 117070 0.66 0.800122
Target:  5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3'
miRNA:   3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 138954 0.66 0.794225
Target:  5'- --cGCACGCcc-CGGuCGCGCCCgucaGCa -3'
miRNA:   3'- ccaCGUGCGcaaGCC-GCGCGGGa---CGc -5'
9073 5' -60.9 NC_002512.2 + 34588 0.66 0.794225
Target:  5'- --aGCuCGCGcccUUCGGCGCcgGCCCccGCGg -3'
miRNA:   3'- ccaCGuGCGC---AAGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 186827 0.66 0.794225
Target:  5'- cGGUGC-C----UCGGCGagGCCCUGCGc -3'
miRNA:   3'- -CCACGuGcgcaAGCCGCg-CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 118584 0.66 0.794225
Target:  5'- gGGaGC-CGCGaUCGGCG-GCCCUcuccccGCGg -3'
miRNA:   3'- -CCaCGuGCGCaAGCCGCgCGGGA------CGC- -5'
9073 5' -60.9 NC_002512.2 + 209768 0.66 0.794225
Target:  5'- --cGCucCGCGUcuuUCGGCaaGCCCgGCGg -3'
miRNA:   3'- ccaCGu-GCGCA---AGCCGcgCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 92139 0.66 0.794225
Target:  5'- -cUGCGgGCGcugCGGCGCGUgcaggaCCUGCc -3'
miRNA:   3'- ccACGUgCGCaa-GCCGCGCG------GGACGc -5'
9073 5' -60.9 NC_002512.2 + 218626 0.66 0.794225
Target:  5'- --aGgACGCGcgUCGGgacccuguCGCGCCCgGCGg -3'
miRNA:   3'- ccaCgUGCGCa-AGCC--------GCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 143167 0.66 0.785692
Target:  5'- cGGUugGC-CGCccucUCGuaguGCGCGCCCUGCa -3'
miRNA:   3'- -CCA--CGuGCGca--AGC----CGCGCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 133394 0.66 0.785692
Target:  5'- cGGUGCcCGUGggCGacGCcaugGCGCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGC--CG----CGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 170372 0.66 0.785692
Target:  5'- aGG-GC-CGUGcgCGGCGcCGCgCUGCa -3'
miRNA:   3'- -CCaCGuGCGCaaGCCGC-GCGgGACGc -5'
9073 5' -60.9 NC_002512.2 + 77468 0.67 0.76827
Target:  5'- cGGUGUGCGCaaugacgCaGCGauCGCCCUGUGg -3'
miRNA:   3'- -CCACGUGCGcaa----GcCGC--GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 11013 0.67 0.76827
Target:  5'- aGG-GCGCGCacggcgUCGGUGC-CCCggGCGa -3'
miRNA:   3'- -CCaCGUGCGca----AGCCGCGcGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 137096 0.67 0.76827
Target:  5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3'
miRNA:   3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 135092 0.67 0.76827
Target:  5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3'
miRNA:   3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 186987 0.67 0.76827
Target:  5'- cGGUGCGCaUGggcuacgCGGCGgGCCUguacGCGg -3'
miRNA:   3'- -CCACGUGcGCaa-----GCCGCgCGGGa---CGC- -5'
9073 5' -60.9 NC_002512.2 + 125012 0.67 0.76827
Target:  5'- cGU-CGCGCcgUCGGCGcCGCCCgcUGCGc -3'
miRNA:   3'- cCAcGUGCGcaAGCCGC-GCGGG--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 121076 0.67 0.76827
Target:  5'- --cGCACGCcucgCGGaacaGCGCCCgcaGCGg -3'
miRNA:   3'- ccaCGUGCGcaa-GCCg---CGCGGGa--CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.