Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9073 | 5' | -60.9 | NC_002512.2 | + | 204699 | 0.66 | 0.80263 |
Target: 5'- cGGcGgACGCGacgUCGGCGacggcggGCCCgggGCGg -3' miRNA: 3'- -CCaCgUGCGCa--AGCCGCg------CGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 190950 | 0.66 | 0.800959 |
Target: 5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3' miRNA: 3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 117070 | 0.66 | 0.800122 |
Target: 5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3' miRNA: 3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 186827 | 0.66 | 0.794225 |
Target: 5'- cGGUGC-C----UCGGCGagGCCCUGCGc -3' miRNA: 3'- -CCACGuGcgcaAGCCGCg-CGGGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 138954 | 0.66 | 0.794225 |
Target: 5'- --cGCACGCcc-CGGuCGCGCCCgucaGCa -3' miRNA: 3'- ccaCGUGCGcaaGCC-GCGCGGGa---CGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 34588 | 0.66 | 0.794225 |
Target: 5'- --aGCuCGCGcccUUCGGCGCcgGCCCccGCGg -3' miRNA: 3'- ccaCGuGCGC---AAGCCGCG--CGGGa-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 218626 | 0.66 | 0.794225 |
Target: 5'- --aGgACGCGcgUCGGgacccuguCGCGCCCgGCGg -3' miRNA: 3'- ccaCgUGCGCa-AGCC--------GCGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 92139 | 0.66 | 0.794225 |
Target: 5'- -cUGCGgGCGcugCGGCGCGUgcaggaCCUGCc -3' miRNA: 3'- ccACGUgCGCaa-GCCGCGCG------GGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 209768 | 0.66 | 0.794225 |
Target: 5'- --cGCucCGCGUcuuUCGGCaaGCCCgGCGg -3' miRNA: 3'- ccaCGu-GCGCA---AGCCGcgCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 118584 | 0.66 | 0.794225 |
Target: 5'- gGGaGC-CGCGaUCGGCG-GCCCUcuccccGCGg -3' miRNA: 3'- -CCaCGuGCGCaAGCCGCgCGGGA------CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 133394 | 0.66 | 0.785692 |
Target: 5'- cGGUGCcCGUGggCGacGCcaugGCGCCCcGCGg -3' miRNA: 3'- -CCACGuGCGCaaGC--CG----CGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 143167 | 0.66 | 0.785692 |
Target: 5'- cGGUugGC-CGCccucUCGuaguGCGCGCCCUGCa -3' miRNA: 3'- -CCA--CGuGCGca--AGC----CGCGCGGGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 170372 | 0.66 | 0.785692 |
Target: 5'- aGG-GC-CGUGcgCGGCGcCGCgCUGCa -3' miRNA: 3'- -CCaCGuGCGCaaGCCGC-GCGgGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 125012 | 0.67 | 0.76827 |
Target: 5'- cGU-CGCGCcgUCGGCGcCGCCCgcUGCGc -3' miRNA: 3'- cCAcGUGCGcaAGCCGC-GCGGG--ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 186987 | 0.67 | 0.76827 |
Target: 5'- cGGUGCGCaUGggcuacgCGGCGgGCCUguacGCGg -3' miRNA: 3'- -CCACGUGcGCaa-----GCCGCgCGGGa---CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 121076 | 0.67 | 0.76827 |
Target: 5'- --cGCACGCcucgCGGaacaGCGCCCgcaGCGg -3' miRNA: 3'- ccaCGUGCGcaa-GCCg---CGCGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 135092 | 0.67 | 0.76827 |
Target: 5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3' miRNA: 3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 137096 | 0.67 | 0.76827 |
Target: 5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3' miRNA: 3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 11013 | 0.67 | 0.76827 |
Target: 5'- aGG-GCGCGCacggcgUCGGUGC-CCCggGCGa -3' miRNA: 3'- -CCaCGUGCGca----AGCCGCGcGGGa-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 77468 | 0.67 | 0.76827 |
Target: 5'- cGGUGUGCGCaaugacgCaGCGauCGCCCUGUGg -3' miRNA: 3'- -CCACGUGCGcaa----GcCGC--GCGGGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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