miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 92139 0.66 0.794225
Target:  5'- -cUGCGgGCGcugCGGCGCGUgcaggaCCUGCc -3'
miRNA:   3'- ccACGUgCGCaa-GCCGCGCG------GGACGc -5'
9073 5' -60.9 NC_002512.2 + 92970 0.68 0.685491
Target:  5'- gGGUGUACGUGUgguugugaUCGGCGaaccaccagagGCCC-GCGa -3'
miRNA:   3'- -CCACGUGCGCA--------AGCCGCg----------CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 93420 0.66 0.83483
Target:  5'- uGGUGUuCGCGUcguacUCGGCGCggauguagugGCCCcGgGu -3'
miRNA:   3'- -CCACGuGCGCA-----AGCCGCG----------CGGGaCgC- -5'
9073 5' -60.9 NC_002512.2 + 94669 0.69 0.618643
Target:  5'- cGGUcgGCACGCucucCGGCGCGCagCUGCc -3'
miRNA:   3'- -CCA--CGUGCGcaa-GCCGCGCGg-GACGc -5'
9073 5' -60.9 NC_002512.2 + 95540 0.7 0.58429
Target:  5'- cGGUGCGggucuggagcucggcCGCGgcgaguccgUCGGCGCcgGCCCcgGCGa -3'
miRNA:   3'- -CCACGU---------------GCGCa--------AGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 99097 0.69 0.618643
Target:  5'- cGUGCuGCGCG-UCGGCG-GCCCUccucGUGg -3'
miRNA:   3'- cCACG-UGCGCaAGCCGCgCGGGA----CGC- -5'
9073 5' -60.9 NC_002512.2 + 99617 0.67 0.741361
Target:  5'- cGUGUACGUGaugcCGGC-CGCCCUGa- -3'
miRNA:   3'- cCACGUGCGCaa--GCCGcGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 99894 0.73 0.444465
Target:  5'- cGG-GCACGCGgcgccgcCGGCGCuCCCgGCGg -3'
miRNA:   3'- -CCaCGUGCGCaa-----GCCGCGcGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 101112 0.72 0.461648
Target:  5'- --aGCGCGCGgcgCGGCGUGCgCUcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa-GCCGCGCGgGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 101584 0.67 0.741361
Target:  5'- aGGUGC-CGCGacUCgGGCGUGCaCCcGCa -3'
miRNA:   3'- -CCACGuGCGCa-AG-CCGCGCG-GGaCGc -5'
9073 5' -60.9 NC_002512.2 + 101603 0.66 0.819027
Target:  5'- cGUGCGgGCGgccgUCGGCccgGCGCCgggacGCGa -3'
miRNA:   3'- cCACGUgCGCa---AGCCG---CGCGGga---CGC- -5'
9073 5' -60.9 NC_002512.2 + 102460 0.68 0.676001
Target:  5'- --gGCGuCGCGgaggagGGCGCGCCCgucGCGg -3'
miRNA:   3'- ccaCGU-GCGCaag---CCGCGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 103536 0.69 0.626302
Target:  5'- cGUGaACGCG-UCGuGCGCGCCCgucccggacgcgGCGg -3'
miRNA:   3'- cCACgUGCGCaAGC-CGCGCGGGa-----------CGC- -5'
9073 5' -60.9 NC_002512.2 + 105179 0.71 0.542856
Target:  5'- aGGUGCACGCGccccaggaCGGCguGCGCCCg--- -3'
miRNA:   3'- -CCACGUGCGCaa------GCCG--CGCGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 106237 0.7 0.589995
Target:  5'- --cGCGCGCGggaaccgCGGCGCGCUCUcccCGg -3'
miRNA:   3'- ccaCGUGCGCaa-----GCCGCGCGGGAc--GC- -5'
9073 5' -60.9 NC_002512.2 + 108322 0.71 0.506059
Target:  5'- uGGcgGCGCGCGgcgggcggUCGGCGCGgCaUGCGc -3'
miRNA:   3'- -CCa-CGUGCGCa-------AGCCGCGCgGgACGC- -5'
9073 5' -60.9 NC_002512.2 + 108991 0.69 0.618643
Target:  5'- cGUGUACcugcucgucgGCGccggCGGCGuCGUCCUGCGg -3'
miRNA:   3'- cCACGUG----------CGCaa--GCCGC-GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 109919 0.73 0.43685
Target:  5'- --cGCGCGCGUUCGGCcccaGCGCCacgaaguccaccgcgUGCGg -3'
miRNA:   3'- ccaCGUGCGCAAGCCG----CGCGGg--------------ACGC- -5'
9073 5' -60.9 NC_002512.2 + 112894 0.66 0.83483
Target:  5'- -cUGCGUGCGgccgUCGGCcCGCCCggacgggGCGu -3'
miRNA:   3'- ccACGUGCGCa---AGCCGcGCGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 113673 0.69 0.656933
Target:  5'- gGGUGCGCGCGggUCGGacguugGCGCCgaagaGCa -3'
miRNA:   3'- -CCACGUGCGCa-AGCCg-----CGCGGga---CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.