miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 4446 0.68 0.685491
Target:  5'- gGGUGCcggGCGCGggggUCGGCGUcgGCCCc--- -3'
miRNA:   3'- -CCACG---UGCGCa---AGCCGCG--CGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 6344 0.66 0.819027
Target:  5'- cGG-GCGCGgGgcCGGCGgGCCgCggGCGc -3'
miRNA:   3'- -CCaCGUGCgCaaGCCGCgCGG-Ga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 11013 0.67 0.76827
Target:  5'- aGG-GCGCGCacggcgUCGGUGC-CCCggGCGa -3'
miRNA:   3'- -CCaCGUGCGca----AGCCGCGcGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 12922 0.7 0.599525
Target:  5'- aGUGCGCccggGCGUUCcGCGCGaagaaCCUGCu -3'
miRNA:   3'- cCACGUG----CGCAAGcCGCGCg----GGACGc -5'
9073 5' -60.9 NC_002512.2 + 13337 0.77 0.235987
Target:  5'- -aUGCugGCGUUC-GCGCGCCgCUGCu -3'
miRNA:   3'- ccACGugCGCAAGcCGCGCGG-GACGc -5'
9073 5' -60.9 NC_002512.2 + 22949 0.67 0.759397
Target:  5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3'
miRNA:   3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 29886 0.69 0.651197
Target:  5'- cGGUGCACGUGggCcgcucguccccgccgGGCGCGCggaCgcgGCGg -3'
miRNA:   3'- -CCACGUGCGCaaG---------------CCGCGCGg--Ga--CGC- -5'
9073 5' -60.9 NC_002512.2 + 34588 0.66 0.794225
Target:  5'- --aGCuCGCGcccUUCGGCGCcgGCCCccGCGg -3'
miRNA:   3'- ccaCGuGCGC---AAGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 45069 0.68 0.676001
Target:  5'- aGGUGU-CGCGgcCGGCGCGgaagggucuCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGCCGCGC---------GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 47819 0.66 0.819027
Target:  5'- cGGaGC-CGCGgcugaggUCGGCGCGgcuggccgacaUCCUGCa -3'
miRNA:   3'- -CCaCGuGCGCa------AGCCGCGC-----------GGGACGc -5'
9073 5' -60.9 NC_002512.2 + 50017 0.69 0.628218
Target:  5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3'
miRNA:   3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 54613 0.67 0.735883
Target:  5'- cGUGUACGCGgcCGccagcuacccgccgaGCGCGgCCCUGgCGa -3'
miRNA:   3'- cCACGUGCGCaaGC---------------CGCGC-GGGAC-GC- -5'
9073 5' -60.9 NC_002512.2 + 67731 0.66 0.83483
Target:  5'- --cGCuuuCGCGgUCGGCGUGCcggCCUcGCGa -3'
miRNA:   3'- ccaCGu--GCGCaAGCCGCGCG---GGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 75632 0.66 0.827006
Target:  5'- cGG-GCACGCGcacgCGG-GCGCUC-GCGc -3'
miRNA:   3'- -CCaCGUGCGCaa--GCCgCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 77468 0.67 0.76827
Target:  5'- cGGUGUGCGCaaugacgCaGCGauCGCCCUGUGg -3'
miRNA:   3'- -CCACGUGCGcaa----GcCGC--GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 80814 0.67 0.741361
Target:  5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3'
miRNA:   3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 88608 0.66 0.805954
Target:  5'- cGUGCGCGCGgccggcgUCGGgacgaacguggucguCGCGCUguucuUUGCGg -3'
miRNA:   3'- cCACGUGCGCa------AGCC---------------GCGCGG-----GACGC- -5'
9073 5' -60.9 NC_002512.2 + 90098 0.67 0.750424
Target:  5'- cGUGUGCGUGUaugucuucuggaUCGcGgGCGCCCggUGCGc -3'
miRNA:   3'- cCACGUGCGCA------------AGC-CgCGCGGG--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 90625 0.74 0.395171
Target:  5'- --cGCGCGcCGggCGGCGCGaCCCgGCGc -3'
miRNA:   3'- ccaCGUGC-GCaaGCCGCGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 90945 0.66 0.826215
Target:  5'- cGGgGCGUGCGUg-GGCGCGacgauccaccagaUCCUGCGg -3'
miRNA:   3'- -CCaCGUGCGCAagCCGCGC-------------GGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.