Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9073 | 5' | -60.9 | NC_002512.2 | + | 4446 | 0.68 | 0.685491 |
Target: 5'- gGGUGCcggGCGCGggggUCGGCGUcgGCCCc--- -3' miRNA: 3'- -CCACG---UGCGCa---AGCCGCG--CGGGacgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 6344 | 0.66 | 0.819027 |
Target: 5'- cGG-GCGCGgGgcCGGCGgGCCgCggGCGc -3' miRNA: 3'- -CCaCGUGCgCaaGCCGCgCGG-Ga-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 11013 | 0.67 | 0.76827 |
Target: 5'- aGG-GCGCGCacggcgUCGGUGC-CCCggGCGa -3' miRNA: 3'- -CCaCGUGCGca----AGCCGCGcGGGa-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 12922 | 0.7 | 0.599525 |
Target: 5'- aGUGCGCccggGCGUUCcGCGCGaagaaCCUGCu -3' miRNA: 3'- cCACGUG----CGCAAGcCGCGCg----GGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 13337 | 0.77 | 0.235987 |
Target: 5'- -aUGCugGCGUUC-GCGCGCCgCUGCu -3' miRNA: 3'- ccACGugCGCAAGcCGCGCGG-GACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 22949 | 0.67 | 0.759397 |
Target: 5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3' miRNA: 3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 29886 | 0.69 | 0.651197 |
Target: 5'- cGGUGCACGUGggCcgcucguccccgccgGGCGCGCggaCgcgGCGg -3' miRNA: 3'- -CCACGUGCGCaaG---------------CCGCGCGg--Ga--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 34588 | 0.66 | 0.794225 |
Target: 5'- --aGCuCGCGcccUUCGGCGCcgGCCCccGCGg -3' miRNA: 3'- ccaCGuGCGC---AAGCCGCG--CGGGa-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 45069 | 0.68 | 0.676001 |
Target: 5'- aGGUGU-CGCGgcCGGCGCGgaagggucuCCCcGCGg -3' miRNA: 3'- -CCACGuGCGCaaGCCGCGC---------GGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 47819 | 0.66 | 0.819027 |
Target: 5'- cGGaGC-CGCGgcugaggUCGGCGCGgcuggccgacaUCCUGCa -3' miRNA: 3'- -CCaCGuGCGCa------AGCCGCGC-----------GGGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 50017 | 0.69 | 0.628218 |
Target: 5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3' miRNA: 3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 54613 | 0.67 | 0.735883 |
Target: 5'- cGUGUACGCGgcCGccagcuacccgccgaGCGCGgCCCUGgCGa -3' miRNA: 3'- cCACGUGCGCaaGC---------------CGCGC-GGGAC-GC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 67731 | 0.66 | 0.83483 |
Target: 5'- --cGCuuuCGCGgUCGGCGUGCcggCCUcGCGa -3' miRNA: 3'- ccaCGu--GCGCaAGCCGCGCG---GGA-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 75632 | 0.66 | 0.827006 |
Target: 5'- cGG-GCACGCGcacgCGG-GCGCUC-GCGc -3' miRNA: 3'- -CCaCGUGCGCaa--GCCgCGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 77468 | 0.67 | 0.76827 |
Target: 5'- cGGUGUGCGCaaugacgCaGCGauCGCCCUGUGg -3' miRNA: 3'- -CCACGUGCGcaa----GcCGC--GCGGGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 80814 | 0.67 | 0.741361 |
Target: 5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3' miRNA: 3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 88608 | 0.66 | 0.805954 |
Target: 5'- cGUGCGCGCGgccggcgUCGGgacgaacguggucguCGCGCUguucuUUGCGg -3' miRNA: 3'- cCACGUGCGCa------AGCC---------------GCGCGG-----GACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 90098 | 0.67 | 0.750424 |
Target: 5'- cGUGUGCGUGUaugucuucuggaUCGcGgGCGCCCggUGCGc -3' miRNA: 3'- cCACGUGCGCA------------AGC-CgCGCGGG--ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 90625 | 0.74 | 0.395171 |
Target: 5'- --cGCGCGcCGggCGGCGCGaCCCgGCGc -3' miRNA: 3'- ccaCGUGC-GCaaGCCGCGC-GGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 90945 | 0.66 | 0.826215 |
Target: 5'- cGGgGCGUGCGUg-GGCGCGacgauccaccagaUCCUGCGg -3' miRNA: 3'- -CCaCGUGCGCAagCCGCGC-------------GGGACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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