miRNA display CGI


Results 1 - 20 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 223533 0.66 0.827006
Target:  5'- --gGCACGCGcccgCGGCccGCGgCCCcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa--GCCG--CGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 221478 0.67 0.731295
Target:  5'- cGGUGCGCguuccugGCGcUCGGCGUccuauuuUCCUGCGc -3'
miRNA:   3'- -CCACGUG-------CGCaAGCCGCGc------GGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 218885 0.66 0.80263
Target:  5'- cGUGCGCGCccUCaucGCGCGCCaCgcgggGCGg -3'
miRNA:   3'- cCACGUGCGcaAGc--CGCGCGG-Ga----CGC- -5'
9073 5' -60.9 NC_002512.2 + 218626 0.66 0.794225
Target:  5'- --aGgACGCGcgUCGGgacccuguCGCGCCCgGCGg -3'
miRNA:   3'- ccaCgUGCGCa-AGCC--------GCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 211351 0.66 0.825423
Target:  5'- gGGgacGCGCGCGgccugaccgccCGGCGCGgCaugCUGCGg -3'
miRNA:   3'- -CCa--CGUGCGCaa---------GCCGCGCgG---GACGC- -5'
9073 5' -60.9 NC_002512.2 + 209768 0.66 0.794225
Target:  5'- --cGCucCGCGUcuuUCGGCaaGCCCgGCGg -3'
miRNA:   3'- ccaCGu-GCGCA---AGCCGcgCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 204699 0.66 0.80263
Target:  5'- cGGcGgACGCGacgUCGGCGacggcggGCCCgggGCGg -3'
miRNA:   3'- -CCaCgUGCGCa--AGCCGCg------CGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 202417 0.68 0.694942
Target:  5'- --cGCGCGCGgaacagUGGCGUGaCCC-GCGg -3'
miRNA:   3'- ccaCGUGCGCaa----GCCGCGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 200837 0.67 0.76827
Target:  5'- aGGUcaGCGgGgGcgCGGCGCGUCuCUGCc -3'
miRNA:   3'- -CCA--CGUgCgCaaGCCGCGCGG-GACGc -5'
9073 5' -60.9 NC_002512.2 + 199979 0.69 0.656933
Target:  5'- --cGC-CGCG-UCcGCGCGCCCgGCGg -3'
miRNA:   3'- ccaCGuGCGCaAGcCGCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 193321 0.68 0.704348
Target:  5'- --cGC-CGC-UUCGGCGCGUucaUCUGCGg -3'
miRNA:   3'- ccaCGuGCGcAAGCCGCGCG---GGACGC- -5'
9073 5' -60.9 NC_002512.2 + 191048 0.71 0.524334
Target:  5'- cGGcGCACGUGgacCGGuCGCGCCUgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa-GCC-GCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 190950 0.66 0.800959
Target:  5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 188908 0.7 0.599525
Target:  5'- aGGUGCGCGCGcggUCGGagaGU-CCCggugGCGg -3'
miRNA:   3'- -CCACGUGCGCa--AGCCg--CGcGGGa---CGC- -5'
9073 5' -60.9 NC_002512.2 + 187170 0.7 0.580492
Target:  5'- uGGUGgACGUGgcccgccaucUUCGGCGUGCCg-GCGc -3'
miRNA:   3'- -CCACgUGCGC----------AAGCCGCGCGGgaCGC- -5'
9073 5' -60.9 NC_002512.2 + 186987 0.67 0.76827
Target:  5'- cGGUGCGCaUGggcuacgCGGCGgGCCUguacGCGg -3'
miRNA:   3'- -CCACGUGcGCaa-----GCCGCgCGGGa---CGC- -5'
9073 5' -60.9 NC_002512.2 + 186827 0.66 0.794225
Target:  5'- cGGUGC-C----UCGGCGagGCCCUGCGc -3'
miRNA:   3'- -CCACGuGcgcaAGCCGCg-CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 181005 0.66 0.827006
Target:  5'- cGUGUugGUGUUCGuGUagagggaggcccGCGUCCUGgGc -3'
miRNA:   3'- cCACGugCGCAAGC-CG------------CGCGGGACgC- -5'
9073 5' -60.9 NC_002512.2 + 174210 0.68 0.676001
Target:  5'- --aGCgGCGCGUUCaGCGCcccGCCCgGCGu -3'
miRNA:   3'- ccaCG-UGCGCAAGcCGCG---CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 171676 0.66 0.827006
Target:  5'- --cGCGCGCGg--GGUGCGCgCC-GCGc -3'
miRNA:   3'- ccaCGUGCGCaagCCGCGCG-GGaCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.