miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 128301 0.68 0.685491
Target:  5'- gGGUGCACGCccgaGUcgCGGCaccUGCUCUGCu -3'
miRNA:   3'- -CCACGUGCG----CAa-GCCGc--GCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 103536 0.69 0.626302
Target:  5'- cGUGaACGCG-UCGuGCGCGCCCgucccggacgcgGCGg -3'
miRNA:   3'- cCACgUGCGCaAGC-CGCGCGGGa-----------CGC- -5'
9073 5' -60.9 NC_002512.2 + 50017 0.69 0.628218
Target:  5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3'
miRNA:   3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 124872 0.69 0.64737
Target:  5'- -cUGCGCGgGgcUCGaCGCGCCCgUGCGg -3'
miRNA:   3'- ccACGUGCgCa-AGCcGCGCGGG-ACGC- -5'
9073 5' -60.9 NC_002512.2 + 29886 0.69 0.651197
Target:  5'- cGGUGCACGUGggCcgcucguccccgccgGGCGCGCggaCgcgGCGg -3'
miRNA:   3'- -CCACGUGCGCaaG---------------CCGCGCGg--Ga--CGC- -5'
9073 5' -60.9 NC_002512.2 + 45069 0.68 0.676001
Target:  5'- aGGUGU-CGCGgcCGGCGCGgaagggucuCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGCCGCGC---------GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 4446 0.68 0.685491
Target:  5'- gGGUGCcggGCGCGggggUCGGCGUcgGCCCc--- -3'
miRNA:   3'- -CCACG---UGCGCa---AGCCGCG--CGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 92970 0.68 0.685491
Target:  5'- gGGUGUACGUGUgguugugaUCGGCGaaccaccagagGCCC-GCGa -3'
miRNA:   3'- -CCACGUGCGCA--------AGCCGCg----------CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 114798 0.68 0.685491
Target:  5'- -cUGCACGCGggUGGCcagGCGCCgC-GCGa -3'
miRNA:   3'- ccACGUGCGCaaGCCG---CGCGG-GaCGC- -5'
9073 5' -60.9 NC_002512.2 + 108991 0.69 0.618643
Target:  5'- cGUGUACcugcucgucgGCGccggCGGCGuCGUCCUGCGg -3'
miRNA:   3'- cCACGUG----------CGCaa--GCCGC-GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 99097 0.69 0.618643
Target:  5'- cGUGCuGCGCG-UCGGCG-GCCCUccucGUGg -3'
miRNA:   3'- cCACG-UGCGCaAGCCGCgCGGGA----CGC- -5'
9073 5' -60.9 NC_002512.2 + 94669 0.69 0.618643
Target:  5'- cGGUcgGCACGCucucCGGCGCGCagCUGCc -3'
miRNA:   3'- -CCA--CGUGCGcaa-GCCGCGCGg-GACGc -5'
9073 5' -60.9 NC_002512.2 + 109919 0.73 0.43685
Target:  5'- --cGCGCGCGUUCGGCcccaGCGCCacgaaguccaccgcgUGCGg -3'
miRNA:   3'- ccaCGUGCGCAAGCCG----CGCGGg--------------ACGC- -5'
9073 5' -60.9 NC_002512.2 + 137199 0.73 0.444465
Target:  5'- cGGUcCGCccgGUGggCGGCGCGCCCgGCGc -3'
miRNA:   3'- -CCAcGUG---CGCaaGCCGCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 101112 0.72 0.461648
Target:  5'- --aGCGCGCGgcgCGGCGUGCgCUcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa-GCCGCGCGgGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 108322 0.71 0.506059
Target:  5'- uGGcgGCGCGCGgcgggcggUCGGCGCGgCaUGCGc -3'
miRNA:   3'- -CCa-CGUGCGCa-------AGCCGCGCgGgACGC- -5'
9073 5' -60.9 NC_002512.2 + 105179 0.71 0.542856
Target:  5'- aGGUGCACGCGccccaggaCGGCguGCGCCCg--- -3'
miRNA:   3'- -CCACGUGCGCaa------GCCG--CGCGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 119376 0.7 0.580492
Target:  5'- uGGUGgACGacg-CGGCG-GCCCUGCu -3'
miRNA:   3'- -CCACgUGCgcaaGCCGCgCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 106237 0.7 0.589995
Target:  5'- --cGCGCGCGggaaccgCGGCGCGCUCUcccCGg -3'
miRNA:   3'- ccaCGUGCGCaa-----GCCGCGCGGGAc--GC- -5'
9073 5' -60.9 NC_002512.2 + 12922 0.7 0.599525
Target:  5'- aGUGCGCccggGCGUUCcGCGCGaagaaCCUGCu -3'
miRNA:   3'- cCACGUG----CGCAAGcCGCGCg----GGACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.