Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9073 | 5' | -60.9 | NC_002512.2 | + | 112894 | 0.66 | 0.83483 |
Target: 5'- -cUGCGUGCGgccgUCGGCcCGCCCggacgggGCGu -3' miRNA: 3'- ccACGUGCGCa---AGCCGcGCGGGa------CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 170372 | 0.66 | 0.785692 |
Target: 5'- aGG-GC-CGUGcgCGGCGcCGCgCUGCa -3' miRNA: 3'- -CCaCGuGCGCaaGCCGC-GCGgGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 133394 | 0.66 | 0.785692 |
Target: 5'- cGGUGCcCGUGggCGacGCcaugGCGCCCcGCGg -3' miRNA: 3'- -CCACGuGCGCaaGC--CG----CGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 136494 | 1.11 | 0.001363 |
Target: 5'- aGGUGCACGCGUUCGGCGCGCCCUGCGg -3' miRNA: 3'- -CCACGUGCGCAAGCCGCGCGGGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 165492 | 0.66 | 0.827006 |
Target: 5'- gGGUgGCuGCGCGUggGGCGCuucuCCCgGCGc -3' miRNA: 3'- -CCA-CG-UGCGCAagCCGCGc---GGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 90945 | 0.66 | 0.826215 |
Target: 5'- cGGgGCGUGCGUg-GGCGCGacgauccaccagaUCCUGCGg -3' miRNA: 3'- -CCaCGUGCGCAagCCGCGC-------------GGGACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 145615 | 0.66 | 0.8109 |
Target: 5'- --gGCGgGCGUUCGGCccGCuGCCCgccuuccGCGu -3' miRNA: 3'- ccaCGUgCGCAAGCCG--CG-CGGGa------CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 218885 | 0.66 | 0.80263 |
Target: 5'- cGUGCGCGCccUCaucGCGCGCCaCgcgggGCGg -3' miRNA: 3'- cCACGUGCGcaAGc--CGCGCGG-Ga----CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 117070 | 0.66 | 0.800122 |
Target: 5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3' miRNA: 3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 218626 | 0.66 | 0.794225 |
Target: 5'- --aGgACGCGcgUCGGgacccuguCGCGCCCgGCGg -3' miRNA: 3'- ccaCgUGCGCa-AGCC--------GCGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 118584 | 0.66 | 0.794225 |
Target: 5'- gGGaGC-CGCGaUCGGCG-GCCCUcuccccGCGg -3' miRNA: 3'- -CCaCGuGCGCaAGCCGCgCGGGA------CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 190950 | 0.66 | 0.800959 |
Target: 5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3' miRNA: 3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 181005 | 0.66 | 0.827006 |
Target: 5'- cGUGUugGUGUUCGuGUagagggaggcccGCGUCCUGgGc -3' miRNA: 3'- cCACGugCGCAAGC-CG------------CGCGGGACgC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 209768 | 0.66 | 0.794225 |
Target: 5'- --cGCucCGCGUcuuUCGGCaaGCCCgGCGg -3' miRNA: 3'- ccaCGu-GCGCA---AGCCGcgCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 171676 | 0.66 | 0.827006 |
Target: 5'- --cGCGCGCGg--GGUGCGCgCC-GCGc -3' miRNA: 3'- ccaCGUGCGCaagCCGCGCG-GGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 204699 | 0.66 | 0.80263 |
Target: 5'- cGGcGgACGCGacgUCGGCGacggcggGCCCgggGCGg -3' miRNA: 3'- -CCaCgUGCGCa--AGCCGCg------CGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 92139 | 0.66 | 0.794225 |
Target: 5'- -cUGCGgGCGcugCGGCGCGUgcaggaCCUGCc -3' miRNA: 3'- ccACGUgCGCaa-GCCGCGCG------GGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 143167 | 0.66 | 0.785692 |
Target: 5'- cGGUugGC-CGCccucUCGuaguGCGCGCCCUGCa -3' miRNA: 3'- -CCA--CGuGCGca--AGC----CGCGCGGGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 223533 | 0.66 | 0.827006 |
Target: 5'- --gGCACGCGcccgCGGCccGCGgCCCcGCGc -3' miRNA: 3'- ccaCGUGCGCaa--GCCG--CGC-GGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 211351 | 0.66 | 0.825423 |
Target: 5'- gGGgacGCGCGCGgccugaccgccCGGCGCGgCaugCUGCGg -3' miRNA: 3'- -CCa--CGUGCGCaa---------GCCGCGCgG---GACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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