miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 136494 1.11 0.001363
Target:  5'- aGGUGCACGCGUUCGGCGCGCCCUGCGg -3'
miRNA:   3'- -CCACGUGCGCAAGCCGCGCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 13337 0.77 0.235987
Target:  5'- -aUGCugGCGUUC-GCGCGCCgCUGCu -3'
miRNA:   3'- ccACGugCGCAAGcCGCGCGG-GACGc -5'
9073 5' -60.9 NC_002512.2 + 90625 0.74 0.395171
Target:  5'- --cGCGCGcCGggCGGCGCGaCCCgGCGc -3'
miRNA:   3'- ccaCGUGC-GCaaGCCGCGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 109919 0.73 0.43685
Target:  5'- --cGCGCGCGUUCGGCcccaGCGCCacgaaguccaccgcgUGCGg -3'
miRNA:   3'- ccaCGUGCGCAAGCCG----CGCGGg--------------ACGC- -5'
9073 5' -60.9 NC_002512.2 + 99894 0.73 0.444465
Target:  5'- cGG-GCACGCGgcgccgcCGGCGCuCCCgGCGg -3'
miRNA:   3'- -CCaCGUGCGCaa-----GCCGCGcGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 137199 0.73 0.444465
Target:  5'- cGGUcCGCccgGUGggCGGCGCGCCCgGCGc -3'
miRNA:   3'- -CCAcGUG---CGCaaGCCGCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 101112 0.72 0.461648
Target:  5'- --aGCGCGCGgcgCGGCGUGCgCUcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa-GCCGCGCGgGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 119101 0.72 0.488061
Target:  5'- aGGUGCGgGCGgccUCGGCGCag-CUGCGg -3'
miRNA:   3'- -CCACGUgCGCa--AGCCGCGcggGACGC- -5'
9073 5' -60.9 NC_002512.2 + 108322 0.71 0.506059
Target:  5'- uGGcgGCGCGCGgcgggcggUCGGCGCGgCaUGCGc -3'
miRNA:   3'- -CCa-CGUGCGCa-------AGCCGCGCgGgACGC- -5'
9073 5' -60.9 NC_002512.2 + 191048 0.71 0.524334
Target:  5'- cGGcGCACGUGgacCGGuCGCGCCUgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa-GCC-GCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 105179 0.71 0.542856
Target:  5'- aGGUGCACGCGccccaggaCGGCguGCGCCCg--- -3'
miRNA:   3'- -CCACGUGCGCaa------GCCG--CGCGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 187170 0.7 0.580492
Target:  5'- uGGUGgACGUGgcccgccaucUUCGGCGUGCCg-GCGc -3'
miRNA:   3'- -CCACgUGCGC----------AAGCCGCGCGGgaCGC- -5'
9073 5' -60.9 NC_002512.2 + 119376 0.7 0.580492
Target:  5'- uGGUGgACGacg-CGGCG-GCCCUGCu -3'
miRNA:   3'- -CCACgUGCgcaaGCCGCgCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 95540 0.7 0.58429
Target:  5'- cGGUGCGggucuggagcucggcCGCGgcgaguccgUCGGCGCcgGCCCcgGCGa -3'
miRNA:   3'- -CCACGU---------------GCGCa--------AGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 106237 0.7 0.589995
Target:  5'- --cGCGCGCGggaaccgCGGCGCGCUCUcccCGg -3'
miRNA:   3'- ccaCGUGCGCaa-----GCCGCGCGGGAc--GC- -5'
9073 5' -60.9 NC_002512.2 + 12922 0.7 0.599525
Target:  5'- aGUGCGCccggGCGUUCcGCGCGaagaaCCUGCu -3'
miRNA:   3'- cCACGUG----CGCAAGcCGCGCg----GGACGc -5'
9073 5' -60.9 NC_002512.2 + 188908 0.7 0.599525
Target:  5'- aGGUGCGCGCGcggUCGGagaGU-CCCggugGCGg -3'
miRNA:   3'- -CCACGUGCGCa--AGCCg--CGcGGGa---CGC- -5'
9073 5' -60.9 NC_002512.2 + 108991 0.69 0.618643
Target:  5'- cGUGUACcugcucgucgGCGccggCGGCGuCGUCCUGCGg -3'
miRNA:   3'- cCACGUG----------CGCaa--GCCGC-GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 94669 0.69 0.618643
Target:  5'- cGGUcgGCACGCucucCGGCGCGCagCUGCc -3'
miRNA:   3'- -CCA--CGUGCGcaa-GCCGCGCGg-GACGc -5'
9073 5' -60.9 NC_002512.2 + 99097 0.69 0.618643
Target:  5'- cGUGCuGCGCG-UCGGCG-GCCCUccucGUGg -3'
miRNA:   3'- cCACG-UGCGCaAGCCGCgCGGGA----CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.