Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9073 | 5' | -60.9 | NC_002512.2 | + | 103536 | 0.69 | 0.626302 |
Target: 5'- cGUGaACGCG-UCGuGCGCGCCCgucccggacgcgGCGg -3' miRNA: 3'- cCACgUGCGCaAGC-CGCGCGGGa-----------CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 50017 | 0.69 | 0.628218 |
Target: 5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3' miRNA: 3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 149166 | 0.69 | 0.637796 |
Target: 5'- cGGUGCcgccCGCGggCccGCGCGCCCUcGCc -3' miRNA: 3'- -CCACGu---GCGCaaGc-CGCGCGGGA-CGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 124872 | 0.69 | 0.64737 |
Target: 5'- -cUGCGCGgGgcUCGaCGCGCCCgUGCGg -3' miRNA: 3'- ccACGUGCgCa-AGCcGCGCGGG-ACGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 166850 | 0.69 | 0.64737 |
Target: 5'- gGGaGCACGUc--CGGCGCuCCCUGCu -3' miRNA: 3'- -CCaCGUGCGcaaGCCGCGcGGGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 29886 | 0.69 | 0.651197 |
Target: 5'- cGGUGCACGUGggCcgcucguccccgccgGGCGCGCggaCgcgGCGg -3' miRNA: 3'- -CCACGUGCGCaaG---------------CCGCGCGg--Ga--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 199979 | 0.69 | 0.656933 |
Target: 5'- --cGC-CGCG-UCcGCGCGCCCgGCGg -3' miRNA: 3'- ccaCGuGCGCaAGcCGCGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 113673 | 0.69 | 0.656933 |
Target: 5'- gGGUGCGCGCGggUCGGacguugGCGCCgaagaGCa -3' miRNA: 3'- -CCACGUGCGCa-AGCCg-----CGCGGga---CGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 151103 | 0.69 | 0.666479 |
Target: 5'- cGUGCACGUGUcUCGGgGCGCg--GUGg -3' miRNA: 3'- cCACGUGCGCA-AGCCgCGCGggaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 174210 | 0.68 | 0.676001 |
Target: 5'- --aGCgGCGCGUUCaGCGCcccGCCCgGCGu -3' miRNA: 3'- ccaCG-UGCGCAAGcCGCG---CGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 45069 | 0.68 | 0.676001 |
Target: 5'- aGGUGU-CGCGgcCGGCGCGgaagggucuCCCcGCGg -3' miRNA: 3'- -CCACGuGCGCaaGCCGCGC---------GGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 102460 | 0.68 | 0.676001 |
Target: 5'- --gGCGuCGCGgaggagGGCGCGCCCgucGCGg -3' miRNA: 3'- ccaCGU-GCGCaag---CCGCGCGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 128301 | 0.68 | 0.685491 |
Target: 5'- gGGUGCACGCccgaGUcgCGGCaccUGCUCUGCu -3' miRNA: 3'- -CCACGUGCG----CAa-GCCGc--GCGGGACGc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 146080 | 0.68 | 0.685491 |
Target: 5'- --cGC-CGCcgcCGGCGCGCCCgacGCGg -3' miRNA: 3'- ccaCGuGCGcaaGCCGCGCGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 4446 | 0.68 | 0.685491 |
Target: 5'- gGGUGCcggGCGCGggggUCGGCGUcgGCCCc--- -3' miRNA: 3'- -CCACG---UGCGCa---AGCCGCG--CGGGacgc -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 92970 | 0.68 | 0.685491 |
Target: 5'- gGGUGUACGUGUgguugugaUCGGCGaaccaccagagGCCC-GCGa -3' miRNA: 3'- -CCACGUGCGCA--------AGCCGCg----------CGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 114798 | 0.68 | 0.685491 |
Target: 5'- -cUGCACGCGggUGGCcagGCGCCgC-GCGa -3' miRNA: 3'- ccACGUGCGCaaGCCG---CGCGG-GaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 169519 | 0.68 | 0.692111 |
Target: 5'- aGGUGUACGCGUccagcucgaacgggUccCGGC-UGCCCgGCGg -3' miRNA: 3'- -CCACGUGCGCA--------------A--GCCGcGCGGGaCGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 133576 | 0.68 | 0.694942 |
Target: 5'- cGUGCG-GCGacCGGCcCGCCCgcgGCGg -3' miRNA: 3'- cCACGUgCGCaaGCCGcGCGGGa--CGC- -5' |
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9073 | 5' | -60.9 | NC_002512.2 | + | 202417 | 0.68 | 0.694942 |
Target: 5'- --cGCGCGCGgaacagUGGCGUGaCCC-GCGg -3' miRNA: 3'- ccaCGUGCGCaa----GCCGCGC-GGGaCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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