miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 114798 0.68 0.685491
Target:  5'- -cUGCACGCGggUGGCcagGCGCCgC-GCGa -3'
miRNA:   3'- ccACGUGCGCaaGCCG---CGCGG-GaCGC- -5'
9073 5' -60.9 NC_002512.2 + 116880 0.66 0.819027
Target:  5'- uGUGguCGCGgcuggCGGCGgGgCCgggGCGg -3'
miRNA:   3'- cCACguGCGCaa---GCCGCgCgGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 117070 0.66 0.800122
Target:  5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3'
miRNA:   3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 118584 0.66 0.794225
Target:  5'- gGGaGC-CGCGaUCGGCG-GCCCUcuccccGCGg -3'
miRNA:   3'- -CCaCGuGCGCaAGCCGCgCGGGA------CGC- -5'
9073 5' -60.9 NC_002512.2 + 119101 0.72 0.488061
Target:  5'- aGGUGCGgGCGgccUCGGCGCag-CUGCGg -3'
miRNA:   3'- -CCACGUgCGCa--AGCCGCGcggGACGC- -5'
9073 5' -60.9 NC_002512.2 + 119376 0.7 0.580492
Target:  5'- uGGUGgACGacg-CGGCG-GCCCUGCu -3'
miRNA:   3'- -CCACgUGCgcaaGCCGCgCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 121076 0.67 0.76827
Target:  5'- --cGCACGCcucgCGGaacaGCGCCCgcaGCGg -3'
miRNA:   3'- ccaCGUGCGcaa-GCCg---CGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 124644 0.67 0.741361
Target:  5'- gGGUGCGCG-GcgCGGCGCucacgcuguacGCCUUcGCGc -3'
miRNA:   3'- -CCACGUGCgCaaGCCGCG-----------CGGGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 124872 0.69 0.64737
Target:  5'- -cUGCGCGgGgcUCGaCGCGCCCgUGCGg -3'
miRNA:   3'- ccACGUGCgCa-AGCcGCGCGGG-ACGC- -5'
9073 5' -60.9 NC_002512.2 + 125012 0.67 0.76827
Target:  5'- cGU-CGCGCcgUCGGCGcCGCCCgcUGCGc -3'
miRNA:   3'- cCAcGUGCGcaAGCCGC-GCGGG--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 125207 0.67 0.738626
Target:  5'- cGGUcGCGCGUGUcgucgUCGGUccggucuuuauuucGCGCCCUcguucGCGc -3'
miRNA:   3'- -CCA-CGUGCGCA-----AGCCG--------------CGCGGGA-----CGC- -5'
9073 5' -60.9 NC_002512.2 + 128301 0.68 0.685491
Target:  5'- gGGUGCACGCccgaGUcgCGGCaccUGCUCUGCu -3'
miRNA:   3'- -CCACGUGCG----CAa-GCCGc--GCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 133394 0.66 0.785692
Target:  5'- cGGUGCcCGUGggCGacGCcaugGCGCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGC--CG----CGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 133576 0.68 0.694942
Target:  5'- cGUGCG-GCGacCGGCcCGCCCgcgGCGg -3'
miRNA:   3'- cCACGUgCGCaaGCCGcGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 135092 0.67 0.76827
Target:  5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3'
miRNA:   3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 136222 0.66 0.819027
Target:  5'- uGGUGCGCGgGggUCaGCGUGCUggGCu -3'
miRNA:   3'- -CCACGUGCgCa-AGcCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 136494 1.11 0.001363
Target:  5'- aGGUGCACGCGUUCGGCGCGCCCUGCGg -3'
miRNA:   3'- -CCACGUGCGCAAGCCGCGCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 136586 0.67 0.732214
Target:  5'- cGGUGCgcggguuggACGCGUacagguagCGGgcCGCGCCCUccaGCGu -3'
miRNA:   3'- -CCACG---------UGCGCAa-------GCC--GCGCGGGA---CGC- -5'
9073 5' -60.9 NC_002512.2 + 137096 0.67 0.76827
Target:  5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3'
miRNA:   3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 137199 0.73 0.444465
Target:  5'- cGGUcCGCccgGUGggCGGCGCGCCCgGCGc -3'
miRNA:   3'- -CCAcGUG---CGCaaGCCGCGCGGGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.