miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9074 5' -58.9 NC_002512.2 + 95994 0.66 0.884436
Target:  5'- --aGCGCCCGggaCCGcCGGCCGa---- -3'
miRNA:   3'- gugCGCGGGCa--GGUuGCCGGCaagaa -5'
9074 5' -58.9 NC_002512.2 + 79480 0.66 0.884436
Target:  5'- cCGCGCGCCCGUg----GGCgGUUCg- -3'
miRNA:   3'- -GUGCGCGGGCAgguugCCGgCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 79156 0.66 0.884436
Target:  5'- gCGCGgGCCgacgggaaGUCCAACGGUCGg---- -3'
miRNA:   3'- -GUGCgCGGg-------CAGGUUGCCGGCaagaa -5'
9074 5' -58.9 NC_002512.2 + 134061 0.66 0.884436
Target:  5'- uGCGCGUCCGgugcagCCAucacCGGCUGcgCUg -3'
miRNA:   3'- gUGCGCGGGCa-----GGUu---GCCGGCaaGAa -5'
9074 5' -58.9 NC_002512.2 + 3614 0.66 0.884436
Target:  5'- uCACGCGCCCcaaccUCCuACGGauuCUGUUCg- -3'
miRNA:   3'- -GUGCGCGGGc----AGGuUGCC---GGCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 115867 0.66 0.880409
Target:  5'- -cCGCGCCCGgugccgcugcggggCCGACGGCggcgggaccaUGUUCa- -3'
miRNA:   3'- guGCGCGGGCa-------------GGUUGCCG----------GCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 166013 0.66 0.877683
Target:  5'- gACG-GCUccggggacgCGUUCGGCGGCCGUUCc- -3'
miRNA:   3'- gUGCgCGG---------GCAGGUUGCCGGCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 154741 0.66 0.877683
Target:  5'- cCGCG-GCCgCGUCCGACGGCg--UCg- -3'
miRNA:   3'- -GUGCgCGG-GCAGGUUGCCGgcaAGaa -5'
9074 5' -58.9 NC_002512.2 + 190958 0.66 0.877683
Target:  5'- gCGgGCGCCCGcCgCGGCGGCCccUCc- -3'
miRNA:   3'- -GUgCGCGGGCaG-GUUGCCGGcaAGaa -5'
9074 5' -58.9 NC_002512.2 + 109106 0.66 0.877683
Target:  5'- cCGC-CGCCCccgCCGACGGCCGc---- -3'
miRNA:   3'- -GUGcGCGGGca-GGUUGCCGGCaagaa -5'
9074 5' -58.9 NC_002512.2 + 75185 0.66 0.877683
Target:  5'- uCGCGcCGCUCGacgCCgGACGGCCGcUCg- -3'
miRNA:   3'- -GUGC-GCGGGCa--GG-UUGCCGGCaAGaa -5'
9074 5' -58.9 NC_002512.2 + 209599 0.66 0.873534
Target:  5'- uCAC-CGCCaCGUCCAcgagauguacgaccuGCGGCCGgaCg- -3'
miRNA:   3'- -GUGcGCGG-GCAGGU---------------UGCCGGCaaGaa -5'
9074 5' -58.9 NC_002512.2 + 92984 0.66 0.870728
Target:  5'- gACGuCGCCCGacCUggUGGCCGUcUCg- -3'
miRNA:   3'- gUGC-GCGGGCa-GGuuGCCGGCA-AGaa -5'
9074 5' -58.9 NC_002512.2 + 100799 0.66 0.870728
Target:  5'- gACGcCGCCCGUCCucGgGGUCGacCUg -3'
miRNA:   3'- gUGC-GCGGGCAGGu-UgCCGGCaaGAa -5'
9074 5' -58.9 NC_002512.2 + 29597 0.66 0.870728
Target:  5'- gACGaGCCCcaGUCCGACGGCuCGUcgUCc- -3'
miRNA:   3'- gUGCgCGGG--CAGGUUGCCG-GCA--AGaa -5'
9074 5' -58.9 NC_002512.2 + 143221 0.66 0.870021
Target:  5'- uCGCGCG-CCGUCCGcucggacGCGGCCa----- -3'
miRNA:   3'- -GUGCGCgGGCAGGU-------UGCCGGcaagaa -5'
9074 5' -58.9 NC_002512.2 + 27960 0.66 0.863576
Target:  5'- -cCGgGCCCGUCgCcgaugGGCGGCCGggCg- -3'
miRNA:   3'- guGCgCGGGCAG-G-----UUGCCGGCaaGaa -5'
9074 5' -58.9 NC_002512.2 + 92736 0.66 0.863576
Target:  5'- gGCGCGCUCgGUCCGAUGGCg------ -3'
miRNA:   3'- gUGCGCGGG-CAGGUUGCCGgcaagaa -5'
9074 5' -58.9 NC_002512.2 + 69421 0.66 0.856233
Target:  5'- aCAUGCGCUCGUgCCccgcgaAACGGCC-UUCg- -3'
miRNA:   3'- -GUGCGCGGGCA-GG------UUGCCGGcAAGaa -5'
9074 5' -58.9 NC_002512.2 + 17804 0.66 0.856233
Target:  5'- gCACGCGCUCGUCguacaGGCGGCgGa---- -3'
miRNA:   3'- -GUGCGCGGGCAGg----UUGCCGgCaagaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.