miRNA display CGI


Results 61 - 80 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 10561 0.66 0.632753
Target:  5'- cGGCGGGCCacGCCGacgcucucCCCGugGCCG-CGGAc -3'
miRNA:   3'- uUCGCUCGG--CGGC--------GGGC--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 109354 0.66 0.631807
Target:  5'- cGAGgGAGCCGCCgggggaaagccgcGCCuccccgucaccgCGAUCGGCGGc -3'
miRNA:   3'- -UUCgCUCGGCGG-------------CGG------------GCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 211358 0.66 0.631807
Target:  5'- -cGCGcGGCCuGaCCGCCCGGCgCGgcaugcuGCGGAa -3'
miRNA:   3'- uuCGC-UCGG-C-GGCGGGCUG-GC-------UGCCU- -5'
9085 3' -64 NC_002512.2 + 222358 0.67 0.623292
Target:  5'- gGAGCG-GCacgggGCCGCCUuccCCGGCGGGc -3'
miRNA:   3'- -UUCGCuCGg----CGGCGGGcu-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 42242 0.67 0.623292
Target:  5'- -cGUG-GCCGCCGCCCuccauGGCUGG-GGAg -3'
miRNA:   3'- uuCGCuCGGCGGCGGG-----CUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 124796 0.67 0.623292
Target:  5'- cGGgGAGacaCGUCGaCCCGACCGcCGGc -3'
miRNA:   3'- uUCgCUCg--GCGGC-GGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 21214 0.67 0.623292
Target:  5'- cAGCG-GCCcccgggacGCCGCCCGG--GGCGGAg -3'
miRNA:   3'- uUCGCuCGG--------CGGCGGGCUggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 120264 0.67 0.623292
Target:  5'- -cGCGGGaCCGCCGgCUGA-UGACGGu -3'
miRNA:   3'- uuCGCUC-GGCGGCgGGCUgGCUGCCu -5'
9085 3' -64 NC_002512.2 + 56461 0.67 0.623292
Target:  5'- cGAGaCGAGgCGCgCGaUgCGAUCGACGGAg -3'
miRNA:   3'- -UUC-GCUCgGCG-GC-GgGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 7224 0.67 0.623292
Target:  5'- --uCGAGgCGCCccucgGCCCGGCCGgccgucgcgGCGGAg -3'
miRNA:   3'- uucGCUCgGCGG-----CGGGCUGGC---------UGCCU- -5'
9085 3' -64 NC_002512.2 + 202131 0.67 0.623292
Target:  5'- uGGCGccggucucGGCCGCCGCCgCGG--GGCGGGu -3'
miRNA:   3'- uUCGC--------UCGGCGGCGG-GCUggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 129978 0.67 0.623292
Target:  5'- cGGCGGGCCcccGgCGCCC--UCGACGGGc -3'
miRNA:   3'- uUCGCUCGG---CgGCGGGcuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 128894 0.67 0.623292
Target:  5'- cGAGaCGGGCCuggcgauCCGCCCG-CCG-CGGGa -3'
miRNA:   3'- -UUC-GCUCGGc------GGCGGGCuGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 133596 0.67 0.614782
Target:  5'- cGAGCGGGCCgGCCuccugcggaccuacgGCUCGAUCGucgccucgucccugGCGGAg -3'
miRNA:   3'- -UUCGCUCGG-CGG---------------CGGGCUGGC--------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 82188 0.67 0.613837
Target:  5'- aGAGCccGuCCGCCGUCgGGCCGGCGu- -3'
miRNA:   3'- -UUCGcuC-GGCGGCGGgCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 151219 0.67 0.613837
Target:  5'- uAGGCuccGAGCCccggcGCCgGCUCGACCGACGc- -3'
miRNA:   3'- -UUCG---CUCGG-----CGG-CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 224623 0.67 0.613837
Target:  5'- cGGGCucgGGGUCGCCGCCgCGGCCu-CGGc -3'
miRNA:   3'- -UUCG---CUCGGCGGCGG-GCUGGcuGCCu -5'
9085 3' -64 NC_002512.2 + 105048 0.67 0.613837
Target:  5'- -cGCGGGCC-UCGCUCGGCgaCGGCGGc -3'
miRNA:   3'- uuCGCUCGGcGGCGGGCUG--GCUGCCu -5'
9085 3' -64 NC_002512.2 + 141439 0.67 0.613837
Target:  5'- --aCGAGCCcCCGCUCGGuCCGACGu- -3'
miRNA:   3'- uucGCUCGGcGGCGGGCU-GGCUGCcu -5'
9085 3' -64 NC_002512.2 + 200224 0.67 0.613837
Target:  5'- gGAGCcgGAGcCCGaggaGCCCGACgaCGACGGGg -3'
miRNA:   3'- -UUCG--CUC-GGCgg--CGGGCUG--GCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.