miRNA display CGI


Results 41 - 60 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 4593 0.66 0.651668
Target:  5'- gAGGCGGcGCCGCgGgCCGcgaGACGGAc -3'
miRNA:   3'- -UUCGCU-CGGCGgCgGGCuggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 76583 0.66 0.651668
Target:  5'- cAGCGGGaaCCgGCCGaCCCgGACCGacccaGCGGAg -3'
miRNA:   3'- uUCGCUC--GG-CGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 216211 0.66 0.642214
Target:  5'- -cGCG-GCCGUCGCCuCGuCCGGgagcUGGAg -3'
miRNA:   3'- uuCGCuCGGCGGCGG-GCuGGCU----GCCU- -5'
9085 3' -64 NC_002512.2 + 150968 0.66 0.642214
Target:  5'- gAGGCGGGCucgCGUCGCCauggugaccgcUGAUUGACGGGu -3'
miRNA:   3'- -UUCGCUCG---GCGGCGG-----------GCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 90639 0.66 0.642214
Target:  5'- -cGCGAcCCGgCGCCgCGGCCG-CGGu -3'
miRNA:   3'- uuCGCUcGGCgGCGG-GCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 15116 0.66 0.642214
Target:  5'- aGGGCGA-CCGgCGCCgGACugCGACGGc -3'
miRNA:   3'- -UUCGCUcGGCgGCGGgCUG--GCUGCCu -5'
9085 3' -64 NC_002512.2 + 133698 0.66 0.642214
Target:  5'- -cGCG-GCCGCCuCCCGgACCaccgGACGGu -3'
miRNA:   3'- uuCGCuCGGCGGcGGGC-UGG----CUGCCu -5'
9085 3' -64 NC_002512.2 + 56336 0.66 0.642214
Target:  5'- -cGCGAGUagacgGCacaGCCCGGgcagacggccCCGACGGAc -3'
miRNA:   3'- uuCGCUCGg----CGg--CGGGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 135212 0.66 0.642214
Target:  5'- cAGCGGGCCgggggGCCcCCCGGCCc-CGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGcGGGCUGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 132544 0.66 0.642214
Target:  5'- cGGGCGGcGCCGucggccucuCCGCCCucGAccCCGGCGGGc -3'
miRNA:   3'- -UUCGCU-CGGC---------GGCGGG--CU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 209029 0.66 0.641268
Target:  5'- uGAGCgGGGCgGCCGCgucCCGGagcgauuCCGACGGc -3'
miRNA:   3'- -UUCG-CUCGgCGGCG---GGCU-------GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 194039 0.66 0.636538
Target:  5'- cGGCGAuCCagGCCGCCUGGCUggugagggcgcacaaGACGGGg -3'
miRNA:   3'- uUCGCUcGG--CGGCGGGCUGG---------------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 131996 0.66 0.632753
Target:  5'- -cGUGGGCCGCC-CCgGgcGCCGGgGGGa -3'
miRNA:   3'- uuCGCUCGGCGGcGGgC--UGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 77957 0.66 0.632753
Target:  5'- -cGCGAGCCGgguUCGUCUcgggGACCGACGa- -3'
miRNA:   3'- uuCGCUCGGC---GGCGGG----CUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 35226 0.66 0.632753
Target:  5'- uGGGCGuGCagGaCCGCCCGAUCGGagaagaGGAc -3'
miRNA:   3'- -UUCGCuCGg-C-GGCGGGCUGGCUg-----CCU- -5'
9085 3' -64 NC_002512.2 + 134062 0.66 0.632753
Target:  5'- -uGCGGGCCGUCGCCaccuuccCCGucuauCGGAu -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcu----GGCu----GCCU- -5'
9085 3' -64 NC_002512.2 + 139990 0.66 0.632753
Target:  5'- -uGCGuggGGUCGCCGaCCCaGACCGAggcgcUGGAg -3'
miRNA:   3'- uuCGC---UCGGCGGC-GGG-CUGGCU-----GCCU- -5'
9085 3' -64 NC_002512.2 + 123163 0.66 0.632753
Target:  5'- -cGCGAucGCCGCCgagGCCgaGGCCGagGCGGGa -3'
miRNA:   3'- uuCGCU--CGGCGG---CGGg-CUGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 10561 0.66 0.632753
Target:  5'- cGGCGGGCCacGCCGacgcucucCCCGugGCCG-CGGAc -3'
miRNA:   3'- uUCGCUCGG--CGGC--------GGGC--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 221054 0.66 0.632753
Target:  5'- cAGCGAGcCCGUCugGCCCaagcuCCGGCGGc -3'
miRNA:   3'- uUCGCUC-GGCGG--CGGGcu---GGCUGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.