miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 122531 0.66 0.661108
Target:  5'- cGGCGcGCCGCUggacaucagGCUCGcCgCGACGGAg -3'
miRNA:   3'- uUCGCuCGGCGG---------CGGGCuG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 76899 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 76849 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 75143 0.66 0.661108
Target:  5'- -cGCGAcGCCGUCGgaCgCGGCCG-CGGAc -3'
miRNA:   3'- uuCGCU-CGGCGGCg-G-GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 207758 0.66 0.661108
Target:  5'- gGGGUgGAGCCGCCGCCguggUGGuuG-CGGGa -3'
miRNA:   3'- -UUCG-CUCGGCGGCGG----GCUggCuGCCU- -5'
9085 3' -64 NC_002512.2 + 110975 0.66 0.661108
Target:  5'- cGAGC-AGCCGCCGgUgGACCGA-GGc -3'
miRNA:   3'- -UUCGcUCGGCGGCgGgCUGGCUgCCu -5'
9085 3' -64 NC_002512.2 + 219677 0.66 0.661108
Target:  5'- --cUGGGCgCGCCGCCCGAggaCGA-GGAg -3'
miRNA:   3'- uucGCUCG-GCGGCGGGCUg--GCUgCCU- -5'
9085 3' -64 NC_002512.2 + 39807 0.66 0.661108
Target:  5'- cAGcCGAGcCCGCUGaCCGGCCG-CGGc -3'
miRNA:   3'- uUC-GCUC-GGCGGCgGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 76924 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 80887 0.66 0.661108
Target:  5'- -cGCG-GCgGCCcCCCGGCCGGUGGu -3'
miRNA:   3'- uuCGCuCGgCGGcGGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 48299 0.66 0.661108
Target:  5'- -cGCGGacCCGCCGCCCcuGCCgccgcaGACGGAc -3'
miRNA:   3'- uuCGCUc-GGCGGCGGGc-UGG------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 82322 0.66 0.661108
Target:  5'- uAGaGGGCCGCgGgCCGccCCGGCGGGu -3'
miRNA:   3'- uUCgCUCGGCGgCgGGCu-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 73379 0.66 0.661108
Target:  5'- -cGCGccCCGCCGCCCaGGCCGcCGu- -3'
miRNA:   3'- uuCGCucGGCGGCGGG-CUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 184656 0.66 0.660165
Target:  5'- -cGCGGG-CGCCGCgCCGAaauccggUCGGCGGc -3'
miRNA:   3'- uuCGCUCgGCGGCG-GGCU-------GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 134253 0.66 0.659222
Target:  5'- cGGcCGAGCCGCCcCCUGGCCuucgucguccgcGCGGGg -3'
miRNA:   3'- uUC-GCUCGGCGGcGGGCUGGc-----------UGCCU- -5'
9085 3' -64 NC_002512.2 + 4593 0.66 0.651668
Target:  5'- gAGGCGGcGCCGCgGgCCGcgaGACGGAc -3'
miRNA:   3'- -UUCGCU-CGGCGgCgGGCuggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 125038 0.66 0.651668
Target:  5'- -cGCGAGgucccuccCCGCCGCuCCaGCCggGACGGGa -3'
miRNA:   3'- uuCGCUC--------GGCGGCG-GGcUGG--CUGCCU- -5'
9085 3' -64 NC_002512.2 + 120872 0.66 0.651668
Target:  5'- -cGCGGGUccgcaggacgaCGCCGCCgGcGCCGACGa- -3'
miRNA:   3'- uuCGCUCG-----------GCGGCGGgC-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 94940 0.66 0.651668
Target:  5'- cGGCGAGCCGgaGCCC--CCGGaGGAa -3'
miRNA:   3'- uUCGCUCGGCggCGGGcuGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 76583 0.66 0.651668
Target:  5'- cAGCGGGaaCCgGCCGaCCCgGACCGacccaGCGGAg -3'
miRNA:   3'- uUCGCUC--GG-CGGC-GGG-CUGGC-----UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.