miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 11095 0.67 0.56685
Target:  5'- cGGCGGuGUCGuCCGCCuCGGCCucguccccgGACGGGg -3'
miRNA:   3'- uUCGCU-CGGC-GGCGG-GCUGG---------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 11580 0.71 0.355863
Target:  5'- gGAGCacGAGCgGCCGCCCagGGCCGG-GGAc -3'
miRNA:   3'- -UUCG--CUCGgCGGCGGG--CUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 11671 0.69 0.502827
Target:  5'- -cGCGGcccGCCGCgGCCCGAggcgggggcCCGAgGGGc -3'
miRNA:   3'- uuCGCU---CGGCGgCGGGCU---------GGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 12274 0.66 0.670529
Target:  5'- --cCGuGgCGCCGCCCGagucGCCGACGa- -3'
miRNA:   3'- uucGCuCgGCGGCGGGC----UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 12306 0.68 0.548292
Target:  5'- gAGGCG-G-CGCCGCCgGACCGGCu-- -3'
miRNA:   3'- -UUCGCuCgGCGGCGGgCUGGCUGccu -5'
9085 3' -64 NC_002512.2 + 12422 0.69 0.476346
Target:  5'- -cGCGAGCuCGCCGCgCGcgaGGCGGGa -3'
miRNA:   3'- uuCGCUCG-GCGGCGgGCuggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 14660 0.67 0.565918
Target:  5'- uGGGCGAGCagguagacggcguUGuCCGCCCcGCCGACGa- -3'
miRNA:   3'- -UUCGCUCG-------------GC-GGCGGGcUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 15116 0.66 0.642214
Target:  5'- aGGGCGA-CCGgCGCCgGACugCGACGGc -3'
miRNA:   3'- -UUCGCUcGGCgGCGGgCUG--GCUGCCu -5'
9085 3' -64 NC_002512.2 + 15656 0.71 0.393595
Target:  5'- cGGCGAGCCgacgaGCCGCCUGAcgucCCGgggcaGCGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGCGGGCU----GGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 21214 0.67 0.623292
Target:  5'- cAGCG-GCCcccgggacGCCGCCCGG--GGCGGAg -3'
miRNA:   3'- uUCGCuCGG--------CGGCGGGCUggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 22785 0.67 0.585564
Target:  5'- -cGaCGAGCUGCgCGCCCGcuACCacaagGGCGGGa -3'
miRNA:   3'- uuC-GCUCGGCG-GCGGGC--UGG-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 25221 0.7 0.408598
Target:  5'- gGAGCGAGCCGCCGgcgauccCCCGcgcgucGCCGuccCGGu -3'
miRNA:   3'- -UUCGCUCGGCGGC-------GGGC------UGGCu--GCCu -5'
9085 3' -64 NC_002512.2 + 27845 0.7 0.425589
Target:  5'- -cGCGAcacGaCCGCgaGCCgGACCGGCGGGg -3'
miRNA:   3'- uuCGCU---C-GGCGg-CGGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 28044 0.75 0.233317
Target:  5'- cAGGCGAGCUGCCGgccgcggaaggagccCCCgGGCgCGGCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGGC---------------GGG-CUG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 28524 0.68 0.548292
Target:  5'- gGGGUGAgcugucggguccGCCGCCGCCCGaugucggccacGCUGACGu- -3'
miRNA:   3'- -UUCGCU------------CGGCGGCGGGC-----------UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 29237 0.72 0.3415
Target:  5'- -cGCGGGUCGCgcaGUCCGuccuCCGACGGGg -3'
miRNA:   3'- uuCGCUCGGCGg--CGGGCu---GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 29893 0.68 0.527194
Target:  5'- -cGUGGGCCGCuCGUCCccgccgggcgcgcgGACgCGGCGGGa -3'
miRNA:   3'- uuCGCUCGGCG-GCGGG--------------CUG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 29959 0.68 0.548292
Target:  5'- cGGUGAGCgGCgG-CCGGCCGcgaACGGAc -3'
miRNA:   3'- uUCGCUCGgCGgCgGGCUGGC---UGCCU- -5'
9085 3' -64 NC_002512.2 + 30013 0.75 0.21607
Target:  5'- aGGGCGAGCCGCCGCacagaaCGGCUagaGAuCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGGCGg-----GCUGG---CU-GCCU- -5'
9085 3' -64 NC_002512.2 + 33511 0.74 0.258478
Target:  5'- cGGCGucCCGaagugaGCCCGGCCGGCGGAg -3'
miRNA:   3'- uUCGCucGGCgg----CGGGCUGGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.