miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 1302 0.68 0.548292
Target:  5'- cGGCGccuGCCGCCGacaCGACCG-CGGu -3'
miRNA:   3'- uUCGCu--CGGCGGCgg-GCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 2221 0.68 0.511797
Target:  5'- cGGCGGcGCCGCCGCUCuuCCucCGGAc -3'
miRNA:   3'- uUCGCU-CGGCGGCGGGcuGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 2272 0.69 0.484219
Target:  5'- -cGCc-GCCGCCGCCCGcccuccgGCCGcuGCGGGu -3'
miRNA:   3'- uuCGcuCGGCGGCGGGC-------UGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 3668 0.66 0.677108
Target:  5'- -cGCG-GCCGaCgGUCCGGagguccucccguccCCGACGGAg -3'
miRNA:   3'- uuCGCuCGGC-GgCGGGCU--------------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 3812 0.67 0.583687
Target:  5'- aGAGCGAGCCGUCgacggaagaguagguGCCgaGGCCGAggucgcagucguagaCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGG---------------CGGg-CUGGCU---------------GCCU- -5'
9085 3' -64 NC_002512.2 + 4083 0.71 0.355863
Target:  5'- cAGGCcacccGGCCGCCcgcgGCCCGGCCGGCGc- -3'
miRNA:   3'- -UUCGc----UCGGCGG----CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 4161 0.69 0.467672
Target:  5'- uGAGCGAGUCGCCGC--GGCUcGCGGGc -3'
miRNA:   3'- -UUCGCUCGGCGGCGggCUGGcUGCCU- -5'
9085 3' -64 NC_002512.2 + 4423 0.68 0.539085
Target:  5'- cGGCG-GCUGCUGgUaGACCGGCGGGg -3'
miRNA:   3'- uUCGCuCGGCGGCgGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 4593 0.66 0.651668
Target:  5'- gAGGCGGcGCCGCgGgCCGcgaGACGGAc -3'
miRNA:   3'- -UUCGCU-CGGCGgCgGGCuggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 4910 0.71 0.369897
Target:  5'- aGGGCGccgccGCCGCCGCCCaGCggguagaCGGCGGAg -3'
miRNA:   3'- -UUCGCu----CGGCGGCGGGcUG-------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 5793 0.67 0.570582
Target:  5'- cGGCGuuuguuacaaaaccGCCGCCGcCCCGuuCGGCGGc -3'
miRNA:   3'- uUCGCu-------------CGGCGGC-GGGCugGCUGCCu -5'
9085 3' -64 NC_002512.2 + 6318 0.74 0.246726
Target:  5'- gAGGUG-GCCGCCGCCCGcggggggACCGggcGCGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGC-------UGGC---UGCCU- -5'
9085 3' -64 NC_002512.2 + 7224 0.67 0.623292
Target:  5'- --uCGAGgCGCCccucgGCCCGGCCGgccgucgcgGCGGAg -3'
miRNA:   3'- uucGCUCgGCGG-----CGGGCUGGC---------UGCCU- -5'
9085 3' -64 NC_002512.2 + 7320 0.67 0.604393
Target:  5'- cGGCGGGCCGCgGCggGACgGuCGGGu -3'
miRNA:   3'- uUCGCUCGGCGgCGggCUGgCuGCCU- -5'
9085 3' -64 NC_002512.2 + 8724 0.66 0.678985
Target:  5'- cGGUcGGCCGCgcgcgccCGCCCGucgaCGACGGGg -3'
miRNA:   3'- uUCGcUCGGCG-------GCGGGCug--GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 9682 0.73 0.282122
Target:  5'- --cCGGGCCGCCGUCgGGCCccGGCGGGg -3'
miRNA:   3'- uucGCUCGGCGGCGGgCUGG--CUGCCU- -5'
9085 3' -64 NC_002512.2 + 10216 0.67 0.604393
Target:  5'- --uCGGGCgGCgCGCCCaGAucCCGACGGGc -3'
miRNA:   3'- uucGCUCGgCG-GCGGG-CU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 10464 0.69 0.459081
Target:  5'- gAGGCc-GCCGCCGcCCCGGgCGugGGc -3'
miRNA:   3'- -UUCGcuCGGCGGC-GGGCUgGCugCCu -5'
9085 3' -64 NC_002512.2 + 10561 0.66 0.632753
Target:  5'- cGGCGGGCCacGCCGacgcucucCCCGugGCCG-CGGAc -3'
miRNA:   3'- uUCGCUCGG--CGGC--------GGGC--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 10838 0.68 0.520833
Target:  5'- cGGgGAGCCcCgCGCCgCGGCCGACGa- -3'
miRNA:   3'- uUCgCUCGGcG-GCGG-GCUGGCUGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.