miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 15116 0.66 0.642214
Target:  5'- aGGGCGA-CCGgCGCCgGACugCGACGGc -3'
miRNA:   3'- -UUCGCUcGGCgGCGGgCUG--GCUGCCu -5'
9085 3' -64 NC_002512.2 + 75143 0.66 0.661108
Target:  5'- -cGCGAcGCCGUCGgaCgCGGCCG-CGGAc -3'
miRNA:   3'- uuCGCU-CGGCGGCg-G-GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 56336 0.66 0.642214
Target:  5'- -cGCGAGUagacgGCacaGCCCGGgcagacggccCCGACGGAc -3'
miRNA:   3'- uuCGCUCGg----CGg--CGGGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 123163 0.66 0.632753
Target:  5'- -cGCGAucGCCGCCgagGCCgaGGCCGagGCGGGa -3'
miRNA:   3'- uuCGCU--CGGCGG---CGGg-CUGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 76849 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 109354 0.66 0.631807
Target:  5'- cGAGgGAGCCGCCgggggaaagccgcGCCuccccgucaccgCGAUCGGCGGc -3'
miRNA:   3'- -UUCgCUCGGCGG-------------CGG------------GCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 80887 0.66 0.661108
Target:  5'- -cGCG-GCgGCCcCCCGGCCGGUGGu -3'
miRNA:   3'- uuCGCuCGgCGGcGGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 139990 0.66 0.632753
Target:  5'- -uGCGuggGGUCGCCGaCCCaGACCGAggcgcUGGAg -3'
miRNA:   3'- uuCGC---UCGGCGGC-GGG-CUGGCU-----GCCU- -5'
9085 3' -64 NC_002512.2 + 135212 0.66 0.642214
Target:  5'- cAGCGGGCCgggggGCCcCCCGGCCc-CGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGcGGGCUGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 134062 0.66 0.632753
Target:  5'- -uGCGGGCCGUCGCCaccuuccCCGucuauCGGAu -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcu----GGCu----GCCU- -5'
9085 3' -64 NC_002512.2 + 35226 0.66 0.632753
Target:  5'- uGGGCGuGCagGaCCGCCCGAUCGGagaagaGGAc -3'
miRNA:   3'- -UUCGCuCGg-C-GGCGGGCUGGCUg-----CCU- -5'
9085 3' -64 NC_002512.2 + 4593 0.66 0.651668
Target:  5'- gAGGCGGcGCCGCgGgCCGcgaGACGGAc -3'
miRNA:   3'- -UUCGCU-CGGCGgCgGGCuggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 76583 0.66 0.651668
Target:  5'- cAGCGGGaaCCgGCCGaCCCgGACCGacccaGCGGAg -3'
miRNA:   3'- uUCGCUC--GG-CGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 73379 0.66 0.661108
Target:  5'- -cGCGccCCGCCGCCCaGGCCGcCGu- -3'
miRNA:   3'- uuCGCucGGCGGCGGG-CUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 133698 0.66 0.642214
Target:  5'- -cGCG-GCCGCCuCCCGgACCaccgGACGGu -3'
miRNA:   3'- uuCGCuCGGCGGcGGGC-UGG----CUGCCu -5'
9085 3' -64 NC_002512.2 + 48299 0.66 0.661108
Target:  5'- -cGCGGacCCGCCGCCCcuGCCgccgcaGACGGAc -3'
miRNA:   3'- uuCGCUc-GGCGGCGGGc-UGG------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 39807 0.66 0.661108
Target:  5'- cAGcCGAGcCCGCUGaCCGGCCG-CGGc -3'
miRNA:   3'- uUC-GCUC-GGCGGCgGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 82322 0.66 0.661108
Target:  5'- uAGaGGGCCGCgGgCCGccCCGGCGGGu -3'
miRNA:   3'- uUCgCUCGGCGgCgGGCu-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 10561 0.66 0.632753
Target:  5'- cGGCGGGCCacGCCGacgcucucCCCGugGCCG-CGGAc -3'
miRNA:   3'- uUCGCUCGG--CGGC--------GGGC--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 134253 0.66 0.659222
Target:  5'- cGGcCGAGCCGCCcCCUGGCCuucgucguccgcGCGGGg -3'
miRNA:   3'- uUC-GCUCGGCGGcGGGCUGGc-----------UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.