miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 125543 1.06 0.001533
Target:  5'- cAAGCGAGCCGCCGCCCGACCGACGGAa -3'
miRNA:   3'- -UUCGCUCGGCGGCGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 82015 0.84 0.054643
Target:  5'- cGGCGAGCCGUCGCCCGggucggggucgcGCCGGCGGc -3'
miRNA:   3'- uUCGCUCGGCGGCGGGC------------UGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 87856 0.8 0.103874
Target:  5'- cGGCGGGUCGCCGgccCCCGGCCG-CGGAa -3'
miRNA:   3'- uUCGCUCGGCGGC---GGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 184624 0.79 0.126049
Target:  5'- -cGCGAGCCcCCGCCggCGGCCGACGGc -3'
miRNA:   3'- uuCGCUCGGcGGCGG--GCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 134133 0.77 0.156187
Target:  5'- cAGGCG-GCCGUCGCggcgcgcgucCCGGCCGGCGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCG----------GGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 74634 0.77 0.163718
Target:  5'- -cGCGAGCCGUcgaCGCCgCGACgGGCGGGa -3'
miRNA:   3'- uuCGCUCGGCG---GCGG-GCUGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 103441 0.77 0.163718
Target:  5'- aAGGCG-GCCGCCGCcgucgCCGGCCgGGCGGGa -3'
miRNA:   3'- -UUCGCuCGGCGGCG-----GGCUGG-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 198156 0.77 0.167604
Target:  5'- -cGCGGGCCGgguCgGCgCCGGCCGGCGGAc -3'
miRNA:   3'- uuCGCUCGGC---GgCG-GGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 137992 0.77 0.167604
Target:  5'- cGAGCGGgccgugcgccgcGCCGCCGCCCGcGCCgGACGGc -3'
miRNA:   3'- -UUCGCU------------CGGCGGCGGGC-UGG-CUGCCu -5'
9085 3' -64 NC_002512.2 + 108502 0.77 0.171172
Target:  5'- aGGGCGAGgccgggcCCGgCGCCCGACCGGcCGGGg -3'
miRNA:   3'- -UUCGCUC-------GGCgGCGGGCUGGCU-GCCU- -5'
9085 3' -64 NC_002512.2 + 152267 0.76 0.179763
Target:  5'- cAGCGAGUCGUCGCUCGucguuCCGGCGGc -3'
miRNA:   3'- uUCGCUCGGCGGCGGGCu----GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 96298 0.76 0.188299
Target:  5'- -cGCGGGCCGCCGCC--GCgGGCGGGc -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcUGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 221163 0.76 0.197189
Target:  5'- cGGGCGGGCgCGCgCGgCCGACCGAccuCGGAg -3'
miRNA:   3'- -UUCGCUCG-GCG-GCgGGCUGGCU---GCCU- -5'
9085 3' -64 NC_002512.2 + 148519 0.75 0.20177
Target:  5'- gAGGCG-GCCGCCGCCCGccCCGGCcgcgagGGAg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGCu-GGCUG------CCU- -5'
9085 3' -64 NC_002512.2 + 142041 0.75 0.211209
Target:  5'- cGGCGAcccGCCGCgagggcccgaCGCCCGGCCGGgGGAu -3'
miRNA:   3'- uUCGCU---CGGCG----------GCGGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 30013 0.75 0.21607
Target:  5'- aGGGCGAGCCGCCGCacagaaCGGCUagaGAuCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGGCGg-----GCUGG---CU-GCCU- -5'
9085 3' -64 NC_002512.2 + 123412 0.75 0.21607
Target:  5'- cGGCGAGgcggucgaggucCCGCCGCCCGugCGcaguCGGAc -3'
miRNA:   3'- uUCGCUC------------GGCGGCGGGCugGCu---GCCU- -5'
9085 3' -64 NC_002512.2 + 128192 0.75 0.221026
Target:  5'- cGAGCGGGCCGCCGgCgGgACCgggGACGGGg -3'
miRNA:   3'- -UUCGCUCGGCGGCgGgC-UGG---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 208813 0.75 0.226079
Target:  5'- gGAGCGGGaCCGCCGCCCGugCGcccucACGc- -3'
miRNA:   3'- -UUCGCUC-GGCGGCGGGCugGC-----UGCcu -5'
9085 3' -64 NC_002512.2 + 112162 0.75 0.226079
Target:  5'- cGGCGAGCCGgCGCUCGAgcCCGcacgcGCGGAg -3'
miRNA:   3'- uUCGCUCGGCgGCGGGCU--GGC-----UGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.