miRNA display CGI


Results 21 - 40 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 110646 0.75 0.231229
Target:  5'- cGGGauccAGCCGCCGCUCGACCG-CGGGc -3'
miRNA:   3'- -UUCgc--UCGGCGGCGGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 28044 0.75 0.233317
Target:  5'- cAGGCGAGCUGCCGgccgcggaaggagccCCCgGGCgCGGCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGGC---------------GGG-CUG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 105602 0.74 0.236478
Target:  5'- cGGuCGAGCCGCaCGCCCGGguCCGACGc- -3'
miRNA:   3'- uUC-GCUCGGCG-GCGGGCU--GGCUGCcu -5'
9085 3' -64 NC_002512.2 + 101634 0.74 0.240212
Target:  5'- -cGCGAGUCGCCGCUCGaggggagcgcggcgGCCG-CGGAc -3'
miRNA:   3'- uuCGCUCGGCGGCGGGC--------------UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 6318 0.74 0.246726
Target:  5'- gAGGUG-GCCGCCGCCCGcggggggACCGggcGCGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGC-------UGGC---UGCCU- -5'
9085 3' -64 NC_002512.2 + 103221 0.74 0.247276
Target:  5'- gAGGCGGcucgcGUCGCCGCCCG-UCGACGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGGGCuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 200712 0.74 0.247276
Target:  5'- uGGCGucgGGCUGCCGCCCGGcgguCCGaACGGGu -3'
miRNA:   3'- uUCGC---UCGGCGGCGGGCU----GGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 138981 0.74 0.252826
Target:  5'- -cGCG-GCCGCCaGUCCGGCCGuccCGGAc -3'
miRNA:   3'- uuCGCuCGGCGG-CGGGCUGGCu--GCCU- -5'
9085 3' -64 NC_002512.2 + 106744 0.74 0.255075
Target:  5'- -cGCGGcGCCGCCGcCCCGucccccgggacggccGCCGACGGc -3'
miRNA:   3'- uuCGCU-CGGCGGC-GGGC---------------UGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 33511 0.74 0.258478
Target:  5'- cGGCGucCCGaagugaGCCCGGCCGGCGGAg -3'
miRNA:   3'- uUCGCucGGCgg----CGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 127477 0.74 0.258478
Target:  5'- gAAGCGguucguGGCCGCCGCCCu-CgGGCGGGa -3'
miRNA:   3'- -UUCGC------UCGGCGGCGGGcuGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 149217 0.74 0.258478
Target:  5'- --cCGucGCCGCCGCCgcggGACCGACGGAc -3'
miRNA:   3'- uucGCu-CGGCGGCGGg---CUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 203355 0.74 0.264234
Target:  5'- cGGGCGAGCUGCCGaCCaGGCCG-CGGu -3'
miRNA:   3'- -UUCGCUCGGCGGC-GGgCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 58892 0.73 0.276055
Target:  5'- aAAGCG-GCgUGUCG-CCGACCGACGGAg -3'
miRNA:   3'- -UUCGCuCG-GCGGCgGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 149247 0.73 0.276055
Target:  5'- cGGCGccGCCGCCGCggaCGGCCGgACGGGu -3'
miRNA:   3'- uUCGCu-CGGCGGCGg--GCUGGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 137979 0.73 0.276055
Target:  5'- cGGCGcGCCGCCGCCCcaGGagaaGACGGAg -3'
miRNA:   3'- uUCGCuCGGCGGCGGG--CUgg--CUGCCU- -5'
9085 3' -64 NC_002512.2 + 226685 0.73 0.276055
Target:  5'- uGAGCGccgGGCCGUCGCCCGcggcggcgucgAgCGACGGGa -3'
miRNA:   3'- -UUCGC---UCGGCGGCGGGC-----------UgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 212359 0.73 0.276055
Target:  5'- aGAGCGAGCUgGCCGCCUacGCCGACGc- -3'
miRNA:   3'- -UUCGCUCGG-CGGCGGGc-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 146736 0.73 0.282122
Target:  5'- -cGCG-GCCGCCggGCCCGACgaccucgaCGACGGGg -3'
miRNA:   3'- uuCGCuCGGCGG--CGGGCUG--------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 9682 0.73 0.282122
Target:  5'- --cCGGGCCGCCGUCgGGCCccGGCGGGg -3'
miRNA:   3'- uucGCUCGGCGGCGGgCUGG--CUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.