miRNA display CGI


Results 21 - 40 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 133698 0.66 0.642214
Target:  5'- -cGCG-GCCGCCuCCCGgACCaccgGACGGu -3'
miRNA:   3'- uuCGCuCGGCGGcGGGC-UGG----CUGCCu -5'
9085 3' -64 NC_002512.2 + 75143 0.66 0.661108
Target:  5'- -cGCGAcGCCGUCGgaCgCGGCCG-CGGAc -3'
miRNA:   3'- uuCGCU-CGGCGGCg-G-GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 123163 0.66 0.632753
Target:  5'- -cGCGAucGCCGCCgagGCCgaGGCCGagGCGGGa -3'
miRNA:   3'- uuCGCU--CGGCGG---CGGg-CUGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 134062 0.66 0.632753
Target:  5'- -uGCGGGCCGUCGCCaccuuccCCGucuauCGGAu -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcu----GGCu----GCCU- -5'
9085 3' -64 NC_002512.2 + 76874 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 124461 0.66 0.670529
Target:  5'- --cCGAGCCGCUGCUgaGCCGGCGc- -3'
miRNA:   3'- uucGCUCGGCGGCGGgcUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 15116 0.66 0.642214
Target:  5'- aGGGCGA-CCGgCGCCgGACugCGACGGc -3'
miRNA:   3'- -UUCGCUcGGCgGCGGgCUG--GCUGCCu -5'
9085 3' -64 NC_002512.2 + 48299 0.66 0.661108
Target:  5'- -cGCGGacCCGCCGCCCcuGCCgccgcaGACGGAc -3'
miRNA:   3'- uuCGCUc-GGCGGCGGGc-UGG------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 10561 0.66 0.632753
Target:  5'- cGGCGGGCCacGCCGacgcucucCCCGugGCCG-CGGAc -3'
miRNA:   3'- uUCGCUCGG--CGGC--------GGGC--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 137289 0.66 0.667705
Target:  5'- -cGCGAccggccucgggaccGCCGCCccuCCCGGCCG-CGGc -3'
miRNA:   3'- uuCGCU--------------CGGCGGc--GGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 183513 0.66 0.670529
Target:  5'- aGGGgGAgGCCGUccuCGCCUGGCUG-CGGAc -3'
miRNA:   3'- -UUCgCU-CGGCG---GCGGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 56336 0.66 0.642214
Target:  5'- -cGCGAGUagacgGCacaGCCCGGgcagacggccCCGACGGAc -3'
miRNA:   3'- uuCGCUCGg----CGg--CGGGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 113207 0.66 0.679923
Target:  5'- cGAGCggGAGCCGgguccUCGCCCGGggaGACGGGc -3'
miRNA:   3'- -UUCG--CUCGGC-----GGCGGGCUgg-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 63444 0.66 0.670529
Target:  5'- cGGCGccGUCGCC-CCCGGaggaCGGCGGGg -3'
miRNA:   3'- uUCGCu-CGGCGGcGGGCUg---GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 116761 0.66 0.679923
Target:  5'- cAGGCcAGCCGCUGUUCG-UgGACGGGc -3'
miRNA:   3'- -UUCGcUCGGCGGCGGGCuGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 12274 0.66 0.670529
Target:  5'- --cCGuGgCGCCGCCCGagucGCCGACGa- -3'
miRNA:   3'- uucGCuCgGCGGCGGGC----UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 76583 0.66 0.651668
Target:  5'- cAGCGGGaaCCgGCCGaCCCgGACCGacccaGCGGAg -3'
miRNA:   3'- uUCGCUC--GG-CGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 8724 0.66 0.678985
Target:  5'- cGGUcGGCCGCgcgcgccCGCCCGucgaCGACGGGg -3'
miRNA:   3'- uUCGcUCGGCG-------GCGGGCug--GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 227319 0.66 0.679923
Target:  5'- gGAGaCGcGCCGgCGCCCGAggaagggGACGGAg -3'
miRNA:   3'- -UUC-GCuCGGCgGCGGGCUgg-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 76899 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.