miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 74627 0.73 0.294574
Target:  5'- -cGCGAGaCCGCCGCgCGAcggcCCGGgGGAg -3'
miRNA:   3'- uuCGCUC-GGCGGCGgGCU----GGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 101634 0.74 0.240212
Target:  5'- -cGCGAGUCGCCGCUCGaggggagcgcggcgGCCG-CGGAc -3'
miRNA:   3'- uuCGCUCGGCGGCGGGC--------------UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 6318 0.74 0.246726
Target:  5'- gAGGUG-GCCGCCGCCCGcggggggACCGggcGCGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGC-------UGGC---UGCCU- -5'
9085 3' -64 NC_002512.2 + 103221 0.74 0.247276
Target:  5'- gAGGCGGcucgcGUCGCCGCCCG-UCGACGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGGGCuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 33511 0.74 0.258478
Target:  5'- cGGCGucCCGaagugaGCCCGGCCGGCGGAg -3'
miRNA:   3'- uUCGCucGGCgg----CGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 127477 0.74 0.258478
Target:  5'- gAAGCGguucguGGCCGCCGCCCu-CgGGCGGGa -3'
miRNA:   3'- -UUCGC------UCGGCGGCGGGcuGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 58892 0.73 0.276055
Target:  5'- aAAGCG-GCgUGUCG-CCGACCGACGGAg -3'
miRNA:   3'- -UUCGCuCG-GCGGCgGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 9682 0.73 0.282122
Target:  5'- --cCGGGCCGCCGUCgGGCCccGGCGGGg -3'
miRNA:   3'- uucGCUCGGCGGCGGgCUGG--CUGCCU- -5'
9085 3' -64 NC_002512.2 + 116713 0.73 0.288295
Target:  5'- cGGCGAcGCCGgucgcgucCCGCCCGGCCG-CGGc -3'
miRNA:   3'- uUCGCU-CGGC--------GGCGGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 105602 0.74 0.236478
Target:  5'- cGGuCGAGCCGCaCGCCCGGguCCGACGc- -3'
miRNA:   3'- uUC-GCUCGGCG-GCGGGCU--GGCUGCcu -5'
9085 3' -64 NC_002512.2 + 28044 0.75 0.233317
Target:  5'- cAGGCGAGCUGCCGgccgcggaaggagccCCCgGGCgCGGCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGGC---------------GGG-CUG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 128192 0.75 0.221026
Target:  5'- cGAGCGGGCCGCCGgCgGgACCgggGACGGGg -3'
miRNA:   3'- -UUCGCUCGGCGGCgGgC-UGG---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 134133 0.77 0.156187
Target:  5'- cAGGCG-GCCGUCGCggcgcgcgucCCGGCCGGCGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCG----------GGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 103441 0.77 0.163718
Target:  5'- aAGGCG-GCCGCCGCcgucgCCGGCCgGGCGGGa -3'
miRNA:   3'- -UUCGCuCGGCGGCG-----GGCUGG-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 137992 0.77 0.167604
Target:  5'- cGAGCGGgccgugcgccgcGCCGCCGCCCGcGCCgGACGGc -3'
miRNA:   3'- -UUCGCU------------CGGCGGCGGGC-UGG-CUGCCu -5'
9085 3' -64 NC_002512.2 + 152267 0.76 0.179763
Target:  5'- cAGCGAGUCGUCGCUCGucguuCCGGCGGc -3'
miRNA:   3'- uUCGCUCGGCGGCGGGCu----GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 96298 0.76 0.188299
Target:  5'- -cGCGGGCCGCCGCC--GCgGGCGGGc -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcUGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 142041 0.75 0.211209
Target:  5'- cGGCGAcccGCCGCgagggcccgaCGCCCGGCCGGgGGAu -3'
miRNA:   3'- uUCGCU---CGGCG----------GCGGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 30013 0.75 0.21607
Target:  5'- aGGGCGAGCCGCCGCacagaaCGGCUagaGAuCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGGCGg-----GCUGG---CU-GCCU- -5'
9085 3' -64 NC_002512.2 + 123412 0.75 0.21607
Target:  5'- cGGCGAGgcggucgaggucCCGCCGCCCGugCGcaguCGGAc -3'
miRNA:   3'- uUCGCUC------------GGCGGCGGGCugGCu---GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.