miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 168967 0.66 0.679923
Target:  5'- gAAGCGcuucgcGGUCGguguCCGCUCGACCGAgCGGu -3'
miRNA:   3'- -UUCGC------UCGGC----GGCGGGCUGGCU-GCCu -5'
9085 3' -64 NC_002512.2 + 120872 0.66 0.651668
Target:  5'- -cGCGGGUccgcaggacgaCGCCGCCgGcGCCGACGa- -3'
miRNA:   3'- uuCGCUCG-----------GCGGCGGgC-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 129684 0.66 0.651668
Target:  5'- cGGCGuAGCCcgaaucGCCGUCCGACuCGAgguaacCGGGg -3'
miRNA:   3'- uUCGC-UCGG------CGGCGGGCUG-GCU------GCCU- -5'
9085 3' -64 NC_002512.2 + 125543 1.06 0.001533
Target:  5'- cAAGCGAGCCGCCGCCCGACCGACGGAa -3'
miRNA:   3'- -UUCGCUCGGCGGCGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 95675 0.66 0.679923
Target:  5'- -cGUGAGCgcgCGuCCGCCgGGCCuccGGCGGGg -3'
miRNA:   3'- uuCGCUCG---GC-GGCGGgCUGG---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 126512 0.66 0.670529
Target:  5'- -cGCGAGCCucugGUCGgacgaCCCGACCG-CGGc -3'
miRNA:   3'- uuCGCUCGG----CGGC-----GGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 183513 0.66 0.670529
Target:  5'- aGGGgGAgGCCGUccuCGCCUGGCUG-CGGAc -3'
miRNA:   3'- -UUCgCU-CGGCG---GCGGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 150682 0.66 0.670529
Target:  5'- cGGGCGcGGCgGUCGCC---CCGACGGAc -3'
miRNA:   3'- -UUCGC-UCGgCGGCGGgcuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 110975 0.66 0.661108
Target:  5'- cGAGC-AGCCGCCGgUgGACCGA-GGc -3'
miRNA:   3'- -UUCGcUCGGCGGCgGgCUGGCUgCCu -5'
9085 3' -64 NC_002512.2 + 125038 0.66 0.651668
Target:  5'- -cGCGAGgucccuccCCGCCGCuCCaGCCggGACGGGa -3'
miRNA:   3'- uuCGCUC--------GGCGGCG-GGcUGG--CUGCCU- -5'
9085 3' -64 NC_002512.2 + 207758 0.66 0.661108
Target:  5'- gGGGUgGAGCCGCCGCCguggUGGuuG-CGGGa -3'
miRNA:   3'- -UUCG-CUCGGCGGCGG----GCUggCuGCCU- -5'
9085 3' -64 NC_002512.2 + 77061 0.66 0.670529
Target:  5'- uGGCGcugcugauccuGCuCGCCGCCCG-CCGucgccGCGGAc -3'
miRNA:   3'- uUCGCu----------CG-GCGGCGGGCuGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 113207 0.66 0.679923
Target:  5'- cGAGCggGAGCCGgguccUCGCCCGGggaGACGGGc -3'
miRNA:   3'- -UUCG--CUCGGC-----GGCGGGCUgg-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 122531 0.66 0.661108
Target:  5'- cGGCGcGCCGCUggacaucagGCUCGcCgCGACGGAg -3'
miRNA:   3'- uUCGCuCGGCGG---------CGGGCuG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 227319 0.66 0.679923
Target:  5'- gGAGaCGcGCCGgCGCCCGAggaagggGACGGAg -3'
miRNA:   3'- -UUC-GCuCGGCgGCGGGCUgg-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 122842 0.66 0.670529
Target:  5'- -cGCGAcgGUCGCCGCCCuGCUGGaagaccaGGAc -3'
miRNA:   3'- uuCGCU--CGGCGGCGGGcUGGCUg------CCU- -5'
9085 3' -64 NC_002512.2 + 184656 0.66 0.660165
Target:  5'- -cGCGGG-CGCCGCgCCGAaauccggUCGGCGGc -3'
miRNA:   3'- uuCGCUCgGCGGCG-GGCU-------GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 94940 0.66 0.651668
Target:  5'- cGGCGAGCCGgaGCCC--CCGGaGGAa -3'
miRNA:   3'- uUCGCUCGGCggCGGGcuGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 116761 0.66 0.679923
Target:  5'- cAGGCcAGCCGCUGUUCG-UgGACGGGc -3'
miRNA:   3'- -UUCGcUCGGCGGCGGGCuGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 124461 0.66 0.670529
Target:  5'- --cCGAGCCGCUGCUgaGCCGGCGc- -3'
miRNA:   3'- uucGCUCGGCGGCGGgcUGGCUGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.