miRNA display CGI


Results 1 - 20 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 227919 0.67 0.57619
Target:  5'- cGGaCGcGCCGCC-UCCGacGCCGGCGGAc -3'
miRNA:   3'- uUC-GCuCGGCGGcGGGC--UGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 227671 0.69 0.491269
Target:  5'- aGAGCGGcGgCGCCGCCggCGACCGagacgacgacggcgGCGGGg -3'
miRNA:   3'- -UUCGCU-CgGCGGCGG--GCUGGC--------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 227319 0.66 0.679923
Target:  5'- gGAGaCGcGCCGgCGCCCGAggaagggGACGGAg -3'
miRNA:   3'- -UUC-GCuCGGCgGCGGGCUgg-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 226789 0.67 0.584625
Target:  5'- cGGGCGAcgccguggucucgGCCGCCGCCgUGGCCGcCGc- -3'
miRNA:   3'- -UUCGCU-------------CGGCGGCGG-GCUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 226685 0.73 0.276055
Target:  5'- uGAGCGccgGGCCGUCGCCCGcggcggcgucgAgCGACGGGa -3'
miRNA:   3'- -UUCGC---UCGGCGGCGGGC-----------UgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 226520 0.68 0.548292
Target:  5'- uGGCGGcccuGCCGCCGuCCuCGAUCGGaGGAa -3'
miRNA:   3'- uUCGCU----CGGCGGC-GG-GCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 225476 0.67 0.594967
Target:  5'- cAGC-AGCCGCCG-UCGACCGcgaucuACGGGg -3'
miRNA:   3'- uUCGcUCGGCGGCgGGCUGGC------UGCCU- -5'
9085 3' -64 NC_002512.2 + 224623 0.67 0.613837
Target:  5'- cGGGCucgGGGUCGCCGCCgCGGCCu-CGGc -3'
miRNA:   3'- -UUCG---CUCGGCGGCGG-GCUGGcuGCCu -5'
9085 3' -64 NC_002512.2 + 224253 0.7 0.433826
Target:  5'- gAGGCGGGUCGgCGCCCGAcgcCCG-CGaGAg -3'
miRNA:   3'- -UUCGCUCGGCgGCGGGCU---GGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 224010 0.68 0.520833
Target:  5'- cGAGCGAcgaGUCGgacgaCGCCCGGgacuCCGACGGGg -3'
miRNA:   3'- -UUCGCU---CGGCg----GCGGGCU----GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 223484 0.68 0.510897
Target:  5'- cAGCGccGCCGCCGCCucccugcccgucgCGACgaccaCGGCGGAg -3'
miRNA:   3'- uUCGCu-CGGCGGCGG-------------GCUG-----GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 223021 0.68 0.557549
Target:  5'- aGGGaCGGGUCGUCGCCCacuCCGGCGaGGu -3'
miRNA:   3'- -UUC-GCUCGGCGGCGGGcu-GGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 222608 0.69 0.467672
Target:  5'- cGGCccccgGGGCCuCgCGCCCGAucCCGACGGAc -3'
miRNA:   3'- uUCG-----CUCGGcG-GCGGGCU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 222558 0.72 0.348629
Target:  5'- cGGCGAcccgaccgucccGCCGCgGCCCG-CCGucGCGGAg -3'
miRNA:   3'- uUCGCU------------CGGCGgCGGGCuGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 222512 0.67 0.56685
Target:  5'- -uGCGccuGGCCGcCCGCCgCGGCCGccgucGCGGu -3'
miRNA:   3'- uuCGC---UCGGC-GGCGG-GCUGGC-----UGCCu -5'
9085 3' -64 NC_002512.2 + 222358 0.67 0.623292
Target:  5'- gGAGCG-GCacgggGCCGCCUuccCCGGCGGGc -3'
miRNA:   3'- -UUCGCuCGg----CGGCGGGcu-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 221163 0.76 0.197189
Target:  5'- cGGGCGGGCgCGCgCGgCCGACCGAccuCGGAg -3'
miRNA:   3'- -UUCGCUCG-GCG-GCgGGCUGGCU---GCCU- -5'
9085 3' -64 NC_002512.2 + 221054 0.66 0.632753
Target:  5'- cAGCGAGcCCGUCugGCCCaagcuCCGGCGGc -3'
miRNA:   3'- uUCGCUC-GGCGG--CGGGcu---GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 220228 0.68 0.52993
Target:  5'- gGGGaCGAGUgCGCCcGCCUGGCCGACa-- -3'
miRNA:   3'- -UUC-GCUCG-GCGG-CGGGCUGGCUGccu -5'
9085 3' -64 NC_002512.2 + 220118 0.67 0.594967
Target:  5'- -cGUGAGCCGCCaCgCgGGgCGGCGGGu -3'
miRNA:   3'- uuCGCUCGGCGGcG-GgCUgGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.