miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 77081 0.67 0.986364
Target:  5'- cGG-GGACcGACgUUCAcCGGCAGCgcuUUCCg -3'
miRNA:   3'- -CCaUCUGuCUG-AAGU-GCCGUCG---GAGG- -5'
9085 5' -53.2 NC_002512.2 + 79996 0.68 0.961779
Target:  5'- cGGaGGucCAGGCa--GCGGCAGCCggagCCg -3'
miRNA:   3'- -CCaUCu-GUCUGaagUGCCGUCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 80416 0.68 0.968207
Target:  5'- uGGUGG-CGuGGCUgu-CGGCGGCgUCCc -3'
miRNA:   3'- -CCAUCuGU-CUGAaguGCCGUCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 80733 0.67 0.980853
Target:  5'- cGGgcGGCAccGGCccCGCGGCGGUC-CCg -3'
miRNA:   3'- -CCauCUGU--CUGaaGUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 80872 0.7 0.921923
Target:  5'- cGGUGu-CGGGCggucCGCGGCGGCCcCCc -3'
miRNA:   3'- -CCAUcuGUCUGaa--GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 81237 0.71 0.910533
Target:  5'- gGGUGG-CGGAaggagUC-CGGCGGCCUgCg -3'
miRNA:   3'- -CCAUCuGUCUga---AGuGCCGUCGGAgG- -5'
9085 5' -53.2 NC_002512.2 + 81366 0.75 0.713338
Target:  5'- cGGccgGGGCGGGCg--GCGGCcGCCUCCu -3'
miRNA:   3'- -CCa--UCUGUCUGaagUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 81811 0.74 0.761452
Target:  5'- cGGgGGACGGACgacCGCGGC-GCgUCCg -3'
miRNA:   3'- -CCaUCUGUCUGaa-GUGCCGuCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 83615 0.66 0.989298
Target:  5'- gGGuUGGACAcGGCgUUCA-GGCGGCCcaCCa -3'
miRNA:   3'- -CC-AUCUGU-CUG-AAGUgCCGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 84082 0.66 0.990567
Target:  5'- uGGUcc-CAGaACUUC-UGGCGgGCCUCCa -3'
miRNA:   3'- -CCAucuGUC-UGAAGuGCCGU-CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 84766 0.67 0.986364
Target:  5'- aGGUAGGCguaguAGAUggccgugUCGgcCGGCAGCCgcgacgCCu -3'
miRNA:   3'- -CCAUCUG-----UCUGa------AGU--GCCGUCGGa-----GG- -5'
9085 5' -53.2 NC_002512.2 + 86131 0.69 0.950531
Target:  5'- aGGUcgcGGACcuggaagccGACgcCGCGGCcGCCUCCg -3'
miRNA:   3'- -CCA---UCUGu--------CUGaaGUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 87293 0.7 0.932384
Target:  5'- gGGUGGACGGAgUcCGaggaGGCGGCCa-- -3'
miRNA:   3'- -CCAUCUGUCUgAaGUg---CCGUCGGagg -5'
9085 5' -53.2 NC_002512.2 + 89339 0.68 0.965097
Target:  5'- aGGUAGAggacCAGAacggcgUCGaGGCGGCCgUCCu -3'
miRNA:   3'- -CCAUCU----GUCUga----AGUgCCGUCGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 90441 0.69 0.9545
Target:  5'- --aGGGCAGGaaggGCGGCGGCCgggCCa -3'
miRNA:   3'- ccaUCUGUCUgaagUGCCGUCGGa--GG- -5'
9085 5' -53.2 NC_002512.2 + 91321 0.75 0.72313
Target:  5'- --cAGAgGGAgcUCACGGCGGCgCUCCg -3'
miRNA:   3'- ccaUCUgUCUgaAGUGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 92623 0.72 0.856028
Target:  5'- ---cGACGGACgg-ACGGCGGCCgCCg -3'
miRNA:   3'- ccauCUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 94912 0.71 0.898224
Target:  5'- cGGUcgccGGGCAGACagcuccggaUCACGGCgAGCCggagCCc -3'
miRNA:   3'- -CCA----UCUGUCUGa--------AGUGCCG-UCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 98360 0.68 0.968207
Target:  5'- cGUuGGCGucCUUCACGGC-GUCUCCc -3'
miRNA:   3'- cCAuCUGUcuGAAGUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 99194 0.71 0.910533
Target:  5'- cGGgcGGCGGGCcccacCACGaGCAGCCcgUCCc -3'
miRNA:   3'- -CCauCUGUCUGaa---GUGC-CGUCGG--AGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.