miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 29950 0.7 0.92727
Target:  5'- -cUGGACAGcCggugaGCGGCGGCCggCCg -3'
miRNA:   3'- ccAUCUGUCuGaag--UGCCGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 36881 0.66 0.992749
Target:  5'- aGGUGGGCAGG----GCGGC-GCCcgcggUCCa -3'
miRNA:   3'- -CCAUCUGUCUgaagUGCCGuCGG-----AGG- -5'
9085 5' -53.2 NC_002512.2 + 39752 0.67 0.982848
Target:  5'- cGGUGGGcCAGGCgagcagCACG-CAGCUgCCg -3'
miRNA:   3'- -CCAUCU-GUCUGaa----GUGCcGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 42428 0.67 0.982848
Target:  5'- --cAGAgCGGACUcaCACgGGCcGCCUCCu -3'
miRNA:   3'- ccaUCU-GUCUGAa-GUG-CCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 45203 0.67 0.980853
Target:  5'- --gGGACcGGCggCGCGGaCGGCCgCCg -3'
miRNA:   3'- ccaUCUGuCUGaaGUGCC-GUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 49211 0.69 0.957147
Target:  5'- cGGgcGGCgugugagaucuucgGGGCcacCGCGGCGGCCUgCCg -3'
miRNA:   3'- -CCauCUG--------------UCUGaa-GUGCCGUCGGA-GG- -5'
9085 5' -53.2 NC_002512.2 + 49298 0.66 0.987899
Target:  5'- uGUGuGACGGACgcCACGGCccugauagagAGCCaCCg -3'
miRNA:   3'- cCAU-CUGUCUGaaGUGCCG----------UCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 50548 0.66 0.993133
Target:  5'- aGGUAGAgCAGuuucgCGCGGCGcugcaggaucugcccGCCUCg -3'
miRNA:   3'- -CCAUCU-GUCugaa-GUGCCGU---------------CGGAGg -5'
9085 5' -53.2 NC_002512.2 + 51277 0.67 0.984683
Target:  5'- cGUGGACGcGGCgaccgagUCgGCGGCGGCCa-- -3'
miRNA:   3'- cCAUCUGU-CUGa------AG-UGCCGUCGGagg -5'
9085 5' -53.2 NC_002512.2 + 53398 0.76 0.653471
Target:  5'- ---cGACGGGCUUCcUGGCGGCCgCCa -3'
miRNA:   3'- ccauCUGUCUGAAGuGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 53886 0.66 0.990567
Target:  5'- aGGgaccGACGGACgaggagaUCuCGGUcGCCUCCc -3'
miRNA:   3'- -CCau--CUGUCUGa------AGuGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 55547 0.68 0.961779
Target:  5'- ---cGGCGGACgagggCGCGGCGGaCCcCCg -3'
miRNA:   3'- ccauCUGUCUGaa---GUGCCGUC-GGaGG- -5'
9085 5' -53.2 NC_002512.2 + 57948 0.67 0.980853
Target:  5'- -aUAGACGGGCgcggCGCGGCGGgCg-- -3'
miRNA:   3'- ccAUCUGUCUGaa--GUGCCGUCgGagg -5'
9085 5' -53.2 NC_002512.2 + 63221 0.66 0.991715
Target:  5'- uGGUGGuacccgcacuCGGGCgccaaCACGGUGGCCcCCu -3'
miRNA:   3'- -CCAUCu---------GUCUGaa---GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 64291 0.65 0.9935
Target:  5'- cGGUAGGgAGGCcaguuggggaGCGGCuGCCcggCCa -3'
miRNA:   3'- -CCAUCUgUCUGaag-------UGCCGuCGGa--GG- -5'
9085 5' -53.2 NC_002512.2 + 68140 0.66 0.987899
Target:  5'- cGUAG-CAGGa---GCGGC-GCCUCCc -3'
miRNA:   3'- cCAUCuGUCUgaagUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 72162 0.66 0.987899
Target:  5'- -aUGGACGccGACUucuUCACGuaGCAGCCcgCCg -3'
miRNA:   3'- ccAUCUGU--CUGA---AGUGC--CGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 74065 0.67 0.980853
Target:  5'- cGGga-GCGGAUcugCACGGacaCGGCCUCCu -3'
miRNA:   3'- -CCaucUGUCUGaa-GUGCC---GUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 74381 0.67 0.984506
Target:  5'- aGGUcGAcCAGGuCUUCcaggagaGCGGCGGCCauggCCg -3'
miRNA:   3'- -CCAuCU-GUCU-GAAG-------UGCCGUCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 74691 0.66 0.989298
Target:  5'- gGGaGGACGGGg--CGCGGUGuCCUCCg -3'
miRNA:   3'- -CCaUCUGUCUgaaGUGCCGUcGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.