miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 94912 0.71 0.898224
Target:  5'- cGGUcgccGGGCAGACagcuccggaUCACGGCgAGCCggagCCc -3'
miRNA:   3'- -CCA----UCUGUCUGa--------AGUGCCG-UCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 175361 0.71 0.902636
Target:  5'- uGGUAGugGGGaugUCcCGGUucgaucggcaucacGGCCUCCg -3'
miRNA:   3'- -CCAUCugUCUga-AGuGCCG--------------UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 18095 0.71 0.910533
Target:  5'- cGGcgGGACGGcCccCGCGGCcacccgGGCCUCCa -3'
miRNA:   3'- -CCa-UCUGUCuGaaGUGCCG------UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 81237 0.71 0.910533
Target:  5'- gGGUGG-CGGAaggagUC-CGGCGGCCUgCg -3'
miRNA:   3'- -CCAUCuGUCUga---AGuGCCGUCGGAgG- -5'
9085 5' -53.2 NC_002512.2 + 113278 0.71 0.910533
Target:  5'- cGGcgGGGCAGc---CGCGGCGGgCCUCCc -3'
miRNA:   3'- -CCa-UCUGUCugaaGUGCCGUC-GGAGG- -5'
9085 5' -53.2 NC_002512.2 + 118017 0.71 0.910533
Target:  5'- gGGUGGACccguacgacgaGGACgcggCgACGGCGGCgCUCUa -3'
miRNA:   3'- -CCAUCUG-----------UCUGaa--G-UGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 99194 0.71 0.910533
Target:  5'- cGGgcGGCGGGCcccacCACGaGCAGCCcgUCCc -3'
miRNA:   3'- -CCauCUGUCUGaa---GUGC-CGUCGG--AGG- -5'
9085 5' -53.2 NC_002512.2 + 163302 0.7 0.916343
Target:  5'- aGGUcuacCAGACca-GCGGCGGUCUCCu -3'
miRNA:   3'- -CCAucu-GUCUGaagUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 183897 0.7 0.916343
Target:  5'- cGGUuacGGACAGuCga-ACGGCuGCCUCg -3'
miRNA:   3'- -CCA---UCUGUCuGaagUGCCGuCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 80872 0.7 0.921923
Target:  5'- cGGUGu-CGGGCggucCGCGGCGGCCcCCc -3'
miRNA:   3'- -CCAUcuGUCUGaa--GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 29950 0.7 0.92727
Target:  5'- -cUGGACAGcCggugaGCGGCGGCCggCCg -3'
miRNA:   3'- ccAUCUGUCuGaag--UGCCGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 118977 0.7 0.92727
Target:  5'- aGGUGcuGCAGaACUgccUGCGGCuGGCCUCCg -3'
miRNA:   3'- -CCAUc-UGUC-UGAa--GUGCCG-UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 17427 0.7 0.92727
Target:  5'- --gAGGCGGAUgcccuccUCGCGGCGGUCgcggCCg -3'
miRNA:   3'- ccaUCUGUCUGa------AGUGCCGUCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 190949 0.7 0.932384
Target:  5'- cGGgcGcacGCGGGCgcccgcCGCGGCGGCCccUCCg -3'
miRNA:   3'- -CCauC---UGUCUGaa----GUGCCGUCGG--AGG- -5'
9085 5' -53.2 NC_002512.2 + 87293 0.7 0.932384
Target:  5'- gGGUGGACGGAgUcCGaggaGGCGGCCa-- -3'
miRNA:   3'- -CCAUCUGUCUgAaGUg---CCGUCGGagg -5'
9085 5' -53.2 NC_002512.2 + 17886 0.7 0.937266
Target:  5'- gGGgacguGAUAGGCg--GCGGCGGCC-CCg -3'
miRNA:   3'- -CCau---CUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 119376 0.7 0.937266
Target:  5'- uGGUGGAC-GAC---GCGGCGGCC-CUg -3'
miRNA:   3'- -CCAUCUGuCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 221157 0.69 0.941917
Target:  5'- cGUcGACGGGCgggCGCGcGCGGCCgaCCg -3'
miRNA:   3'- cCAuCUGUCUGaa-GUGC-CGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 103350 0.69 0.941917
Target:  5'- --gGGGCGGACggCACGGUcgaggucaGGCCgCCg -3'
miRNA:   3'- ccaUCUGUCUGaaGUGCCG--------UCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 18956 0.69 0.941917
Target:  5'- --gGGGCGGACUgcaUCGCGGCGaugauGCCggagagCCg -3'
miRNA:   3'- ccaUCUGUCUGA---AGUGCCGU-----CGGa-----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.