miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 125578 1.14 0.004375
Target:  5'- aGGUAGACAGACUUCACGGCAGCCUCCc -3'
miRNA:   3'- -CCAUCUGUCUGAAGUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 179761 0.81 0.405042
Target:  5'- gGGUcucGCAGAUguaCACGGCGGCCUCCu -3'
miRNA:   3'- -CCAuc-UGUCUGaa-GUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 114153 0.78 0.533486
Target:  5'- uGGUGGGCAG-CgucgUCuCGGCcGCCUCCg -3'
miRNA:   3'- -CCAUCUGUCuGa---AGuGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 53398 0.76 0.653471
Target:  5'- ---cGACGGGCUUCcUGGCGGCCgCCa -3'
miRNA:   3'- ccauCUGUCUGAAGuGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 123060 0.76 0.673581
Target:  5'- uGGcGGAagaGGAggUCGCGGCGGCCUCg -3'
miRNA:   3'- -CCaUCUg--UCUgaAGUGCCGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 20162 0.75 0.703478
Target:  5'- aGGUGGACAGGCagaccuucUCGCGGacgaaGGCCUgCa -3'
miRNA:   3'- -CCAUCUGUCUGa-------AGUGCCg----UCGGAgG- -5'
9085 5' -53.2 NC_002512.2 + 81366 0.75 0.713338
Target:  5'- cGGccgGGGCGGGCg--GCGGCcGCCUCCu -3'
miRNA:   3'- -CCa--UCUGUCUGaagUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 91321 0.75 0.72313
Target:  5'- --cAGAgGGAgcUCACGGCGGCgCUCCg -3'
miRNA:   3'- ccaUCUgUCUgaAGUGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 180650 0.75 0.732847
Target:  5'- gGGUGcGGCAGGCcgcCGCGGUGGCC-CCg -3'
miRNA:   3'- -CCAU-CUGUCUGaa-GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 81811 0.74 0.761452
Target:  5'- cGGgGGACGGACgacCGCGGC-GCgUCCg -3'
miRNA:   3'- -CCaUCUGUCUGaa-GUGCCGuCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 137208 0.74 0.779979
Target:  5'- cGGUGGGCGGcGCgcccggCGCgGGCGGCCgUCCc -3'
miRNA:   3'- -CCAUCUGUC-UGaa----GUG-CCGUCGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 133686 0.73 0.806782
Target:  5'- cGUGG-CcGACcUCGCGGCcGCCUCCc -3'
miRNA:   3'- cCAUCuGuCUGaAGUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 156484 0.72 0.840329
Target:  5'- cGGgcucGGCGGGCUgggcggaCACGGCGGCCUg- -3'
miRNA:   3'- -CCau--CUGUCUGAa------GUGCCGUCGGAgg -5'
9085 5' -53.2 NC_002512.2 + 192616 0.72 0.840329
Target:  5'- ---cGGCGGGCg--ACGGCGGCCUCa -3'
miRNA:   3'- ccauCUGUCUGaagUGCCGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 92623 0.72 0.856028
Target:  5'- ---cGACGGACgg-ACGGCGGCCgCCg -3'
miRNA:   3'- ccauCUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 105656 0.72 0.863585
Target:  5'- aGGUAGggcgagccgcaGCAGACggCGCGGUAcucgcgguGCCUCUg -3'
miRNA:   3'- -CCAUC-----------UGUCUGaaGUGCCGU--------CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 117813 0.71 0.891731
Target:  5'- aGgcGACGGGC-UCGCGGCGGaCCgacgUCCu -3'
miRNA:   3'- cCauCUGUCUGaAGUGCCGUC-GG----AGG- -5'
9085 5' -53.2 NC_002512.2 + 215302 0.71 0.891731
Target:  5'- cGGggAGACGGGCUgcggcgacUACGGCAccgGCUUCCu -3'
miRNA:   3'- -CCa-UCUGUCUGAa-------GUGCCGU---CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 94912 0.71 0.898224
Target:  5'- cGGUcgccGGGCAGACagcuccggaUCACGGCgAGCCggagCCc -3'
miRNA:   3'- -CCA----UCUGUCUGa--------AGUGCCG-UCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 17973 0.71 0.898224
Target:  5'- gGGUcccGACGcucGACgaCGCGGCAGCC-CCg -3'
miRNA:   3'- -CCAu--CUGU---CUGaaGUGCCGUCGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.