miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 9339 0.69 0.950531
Target:  5'- aGGUAGACGgcgguGACgcccUCGCGcaGCAGCUccUCCa -3'
miRNA:   3'- -CCAUCUGU-----CUGa---AGUGC--CGUCGG--AGG- -5'
9085 5' -53.2 NC_002512.2 + 118977 0.7 0.92727
Target:  5'- aGGUGcuGCAGaACUgccUGCGGCuGGCCUCCg -3'
miRNA:   3'- -CCAUc-UGUC-UGAa--GUGCCG-UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 17427 0.7 0.92727
Target:  5'- --gAGGCGGAUgcccuccUCGCGGCGGUCgcggCCg -3'
miRNA:   3'- ccaUCUGUCUGa------AGUGCCGUCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 87293 0.7 0.932384
Target:  5'- gGGUGGACGGAgUcCGaggaGGCGGCCa-- -3'
miRNA:   3'- -CCAUCUGUCUgAaGUg---CCGUCGGagg -5'
9085 5' -53.2 NC_002512.2 + 17886 0.7 0.937266
Target:  5'- gGGgacguGAUAGGCg--GCGGCGGCC-CCg -3'
miRNA:   3'- -CCau---CUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 119376 0.7 0.937266
Target:  5'- uGGUGGAC-GAC---GCGGCGGCC-CUg -3'
miRNA:   3'- -CCAUCUGuCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 18956 0.69 0.941917
Target:  5'- --gGGGCGGACUgcaUCGCGGCGaugauGCCggagagCCg -3'
miRNA:   3'- ccaUCUGUCUGA---AGUGCCGU-----CGGa-----GG- -5'
9085 5' -53.2 NC_002512.2 + 120794 0.69 0.946338
Target:  5'- gGGgcGGCgGGACg--GCGGCGGUCUCUc -3'
miRNA:   3'- -CCauCUG-UCUGaagUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 86131 0.69 0.950531
Target:  5'- aGGUcgcGGACcuggaagccGACgcCGCGGCcGCCUCCg -3'
miRNA:   3'- -CCA---UCUGu--------CUGaaGUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 29950 0.7 0.92727
Target:  5'- -cUGGACAGcCggugaGCGGCGGCCggCCg -3'
miRNA:   3'- ccAUCUGUCuGaag--UGCCGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 80872 0.7 0.921923
Target:  5'- cGGUGu-CGGGCggucCGCGGCGGCCcCCc -3'
miRNA:   3'- -CCAUcuGUCUGaa--GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 81237 0.71 0.910533
Target:  5'- gGGUGG-CGGAaggagUC-CGGCGGCCUgCg -3'
miRNA:   3'- -CCAUCuGUCUga---AGuGCCGUCGGAgG- -5'
9085 5' -53.2 NC_002512.2 + 53398 0.76 0.653471
Target:  5'- ---cGACGGGCUUCcUGGCGGCCgCCa -3'
miRNA:   3'- ccauCUGUCUGAAGuGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 20162 0.75 0.703478
Target:  5'- aGGUGGACAGGCagaccuucUCGCGGacgaaGGCCUgCa -3'
miRNA:   3'- -CCAUCUGUCUGa-------AGUGCCg----UCGGAgG- -5'
9085 5' -53.2 NC_002512.2 + 81366 0.75 0.713338
Target:  5'- cGGccgGGGCGGGCg--GCGGCcGCCUCCu -3'
miRNA:   3'- -CCa--UCUGUCUGaagUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 81811 0.74 0.761452
Target:  5'- cGGgGGACGGACgacCGCGGC-GCgUCCg -3'
miRNA:   3'- -CCaUCUGUCUGaa-GUGCCGuCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 137208 0.74 0.779979
Target:  5'- cGGUGGGCGGcGCgcccggCGCgGGCGGCCgUCCc -3'
miRNA:   3'- -CCAUCUGUC-UGaa----GUG-CCGUCGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 133686 0.73 0.806782
Target:  5'- cGUGG-CcGACcUCGCGGCcGCCUCCc -3'
miRNA:   3'- cCAUCuGuCUGaAGUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 17973 0.71 0.898224
Target:  5'- gGGUcccGACGcucGACgaCGCGGCAGCC-CCg -3'
miRNA:   3'- -CCAu--CUGU---CUGaaGUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 18095 0.71 0.910533
Target:  5'- cGGcgGGACGGcCccCGCGGCcacccgGGCCUCCa -3'
miRNA:   3'- -CCa-UCUGUCuGaaGUGCCG------UCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.