miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 64291 0.65 0.9935
Target:  5'- cGGUAGGgAGGCcaguuggggaGCGGCuGCCcggCCa -3'
miRNA:   3'- -CCAUCUgUCUGaag-------UGCCGuCGGa--GG- -5'
9085 5' -53.2 NC_002512.2 + 83615 0.66 0.989298
Target:  5'- gGGuUGGACAcGGCgUUCA-GGCGGCCcaCCa -3'
miRNA:   3'- -CC-AUCUGU-CUG-AAGUgCCGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 5828 0.66 0.992749
Target:  5'- aGGUcgcAGACGcccGACgagUCGucccCGGCGGCC-CCg -3'
miRNA:   3'- -CCA---UCUGU---CUGa--AGU----GCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 53886 0.66 0.990567
Target:  5'- aGGgaccGACGGACgaggagaUCuCGGUcGCCUCCc -3'
miRNA:   3'- -CCau--CUGUCUGa------AGuGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 134133 0.66 0.989298
Target:  5'- --cAGGCGGcCgUCGCGGCGcGCgUCCc -3'
miRNA:   3'- ccaUCUGUCuGaAGUGCCGU-CGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 26663 0.66 0.992749
Target:  5'- aGGUcggGGGCGGGCUcgaaGCGGCAGaCguacgCCg -3'
miRNA:   3'- -CCA---UCUGUCUGAag--UGCCGUCgGa----GG- -5'
9085 5' -53.2 NC_002512.2 + 36881 0.66 0.992749
Target:  5'- aGGUGGGCAGG----GCGGC-GCCcgcggUCCa -3'
miRNA:   3'- -CCAUCUGUCUgaagUGCCGuCGG-----AGG- -5'
9085 5' -53.2 NC_002512.2 + 153268 0.66 0.991715
Target:  5'- ---cGACGGAUgcgAUGGCGGCC-CCg -3'
miRNA:   3'- ccauCUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 201020 0.66 0.991715
Target:  5'- cGUuu-CAGGUUUCACGGCAucGCCaUCCa -3'
miRNA:   3'- cCAucuGUCUGAAGUGCCGU--CGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 68140 0.66 0.987899
Target:  5'- cGUAG-CAGGa---GCGGC-GCCUCCc -3'
miRNA:   3'- cCAUCuGUCUgaagUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 84082 0.66 0.990567
Target:  5'- uGGUcc-CAGaACUUC-UGGCGgGCCUCCa -3'
miRNA:   3'- -CCAucuGUC-UGAAGuGCCGU-CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 14219 0.66 0.989298
Target:  5'- cGGU-GACGGAa---GCGGUAGCaCUUCu -3'
miRNA:   3'- -CCAuCUGUCUgaagUGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 177414 0.66 0.992749
Target:  5'- aGGUGGACGuGACUUUgAgGGgGGUCUUUa -3'
miRNA:   3'- -CCAUCUGU-CUGAAG-UgCCgUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 49298 0.66 0.987899
Target:  5'- uGUGuGACGGACgcCACGGCccugauagagAGCCaCCg -3'
miRNA:   3'- cCAU-CUGUCUGaaGUGCCG----------UCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 15457 0.66 0.988754
Target:  5'- cGUAGACggGGACgcgguccucgggCGCGGC-GCgCUCCg -3'
miRNA:   3'- cCAUCUG--UCUGaa----------GUGCCGuCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 72162 0.66 0.987899
Target:  5'- -aUGGACGccGACUucuUCACGuaGCAGCCcgCCg -3'
miRNA:   3'- ccAUCUGU--CUGA---AGUGC--CGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 74691 0.66 0.989298
Target:  5'- gGGaGGACGGGg--CGCGGUGuCCUCCg -3'
miRNA:   3'- -CCaUCUGUCUgaaGUGCCGUcGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 50548 0.66 0.993133
Target:  5'- aGGUAGAgCAGuuucgCGCGGCGcugcaggaucugcccGCCUCg -3'
miRNA:   3'- -CCAUCU-GUCugaa-GUGCCGU---------------CGGAGg -5'
9085 5' -53.2 NC_002512.2 + 63221 0.66 0.991715
Target:  5'- uGGUGGuacccgcacuCGGGCgccaaCACGGUGGCCcCCu -3'
miRNA:   3'- -CCAUCu---------GUCUGaa---GUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 3061 0.66 0.989298
Target:  5'- cGgcGGCGGACgcggCgGCGGCGGCggCCa -3'
miRNA:   3'- cCauCUGUCUGaa--G-UGCCGUCGgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.