miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 2823 0.67 0.984683
Target:  5'- aGUAGACAuAUccCACGGCuccGGCCgUCCg -3'
miRNA:   3'- cCAUCUGUcUGaaGUGCCG---UCGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 3061 0.66 0.989298
Target:  5'- cGgcGGCGGACgcggCgGCGGCGGCggCCa -3'
miRNA:   3'- cCauCUGUCUGaa--G-UGCCGUCGgaGG- -5'
9085 5' -53.2 NC_002512.2 + 4317 0.68 0.97635
Target:  5'- aGGUAGGCGcaucgcGACUuucacuccuUCGgGGCAGCUcggcguUCCg -3'
miRNA:   3'- -CCAUCUGU------CUGA---------AGUgCCGUCGG------AGG- -5'
9085 5' -53.2 NC_002512.2 + 5252 0.67 0.982848
Target:  5'- cGUAGGCcgAGGC--CGCGGCGGCgaCCc -3'
miRNA:   3'- cCAUCUG--UCUGaaGUGCCGUCGgaGG- -5'
9085 5' -53.2 NC_002512.2 + 5828 0.66 0.992749
Target:  5'- aGGUcgcAGACGcccGACgagUCGucccCGGCGGCC-CCg -3'
miRNA:   3'- -CCA---UCUGU---CUGa--AGU----GCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 6073 0.67 0.980853
Target:  5'- uGgcGACGcGCgagcgguaUUCACGGCAGCUUUCg -3'
miRNA:   3'- cCauCUGUcUG--------AAGUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 9339 0.69 0.950531
Target:  5'- aGGUAGACGgcgguGACgcccUCGCGcaGCAGCUccUCCa -3'
miRNA:   3'- -CCAUCUGU-----CUGa---AGUGC--CGUCGG--AGG- -5'
9085 5' -53.2 NC_002512.2 + 9501 0.68 0.972766
Target:  5'- gGGUAGAC-GACggccggccccagCACGGCGGCggcggCCa -3'
miRNA:   3'- -CCAUCUGuCUGaa----------GUGCCGUCGga---GG- -5'
9085 5' -53.2 NC_002512.2 + 12466 0.68 0.971115
Target:  5'- cGGUGcuGACGGggaacgacgugcGCUUCAUcaaGGCcuGCCUCCa -3'
miRNA:   3'- -CCAU--CUGUC------------UGAAGUG---CCGu-CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 14219 0.66 0.989298
Target:  5'- cGGU-GACGGAa---GCGGUAGCaCUUCu -3'
miRNA:   3'- -CCAuCUGUCUgaagUGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 15012 0.69 0.958248
Target:  5'- cGGgcugAGGCAGACgua--GGCcagguccugGGCCUCCa -3'
miRNA:   3'- -CCa---UCUGUCUGaagugCCG---------UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 15457 0.66 0.988754
Target:  5'- cGUAGACggGGACgcgguccucgggCGCGGC-GCgCUCCg -3'
miRNA:   3'- cCAUCUG--UCUGaa----------GUGCCGuCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 17427 0.7 0.92727
Target:  5'- --gAGGCGGAUgcccuccUCGCGGCGGUCgcggCCg -3'
miRNA:   3'- ccaUCUGUCUGa------AGUGCCGUCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 17886 0.7 0.937266
Target:  5'- gGGgacguGAUAGGCg--GCGGCGGCC-CCg -3'
miRNA:   3'- -CCau---CUGUCUGaagUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 17973 0.71 0.898224
Target:  5'- gGGUcccGACGcucGACgaCGCGGCAGCC-CCg -3'
miRNA:   3'- -CCAu--CUGU---CUGaaGUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 18095 0.71 0.910533
Target:  5'- cGGcgGGACGGcCccCGCGGCcacccgGGCCUCCa -3'
miRNA:   3'- -CCa-UCUGUCuGaaGUGCCG------UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 18956 0.69 0.941917
Target:  5'- --gGGGCGGACUgcaUCGCGGCGaugauGCCggagagCCg -3'
miRNA:   3'- ccaUCUGUCUGA---AGUGCCGU-----CGGa-----GG- -5'
9085 5' -53.2 NC_002512.2 + 20162 0.75 0.703478
Target:  5'- aGGUGGACAGGCagaccuucUCGCGGacgaaGGCCUgCa -3'
miRNA:   3'- -CCAUCUGUCUGa-------AGUGCCg----UCGGAgG- -5'
9085 5' -53.2 NC_002512.2 + 26361 0.66 0.990567
Target:  5'- aGGUGGGCAGcuguguuuaggcGCaUUCGCaacGCAGCUUCg -3'
miRNA:   3'- -CCAUCUGUC------------UG-AAGUGc--CGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 26663 0.66 0.992749
Target:  5'- aGGUcggGGGCGGGCUcgaaGCGGCAGaCguacgCCg -3'
miRNA:   3'- -CCA---UCUGUCUGAag--UGCCGUCgGa----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.