miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 222314 0.67 0.984683
Target:  5'- cGG-AGGCgguaccggAGGCUgcgGCGGC-GCCUCCa -3'
miRNA:   3'- -CCaUCUG--------UCUGAag-UGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 221157 0.69 0.941917
Target:  5'- cGUcGACGGGCgggCGCGcGCGGCCgaCCg -3'
miRNA:   3'- cCAuCUGUCUGaa-GUGC-CGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 219416 0.67 0.97869
Target:  5'- ---cGACgcccacgcccgGGGCg--GCGGCGGCCUCCu -3'
miRNA:   3'- ccauCUG-----------UCUGaagUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 215302 0.71 0.891731
Target:  5'- cGGggAGACGGGCUgcggcgacUACGGCAccgGCUUCCu -3'
miRNA:   3'- -CCa-UCUGUCUGAa-------GUGCCGU---CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 205931 0.69 0.946338
Target:  5'- cGUAGaACGcGAaguugucgCGCGGCAGCCUCa -3'
miRNA:   3'- cCAUC-UGU-CUgaa-----GUGCCGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 201109 0.67 0.97869
Target:  5'- --aAGAUgAGGCacaggUCGCGGUGGCgCUCCa -3'
miRNA:   3'- ccaUCUG-UCUGa----AGUGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 201020 0.66 0.991715
Target:  5'- cGUuu-CAGGUUUCACGGCAucGCCaUCCa -3'
miRNA:   3'- cCAucuGUCUGAAGUGCCGU--CGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 200648 0.69 0.9545
Target:  5'- cGGaGGACGGACUgcgcgaccCGCGGCcGGCgUUCg -3'
miRNA:   3'- -CCaUCUGUCUGAa-------GUGCCG-UCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 199584 0.67 0.986364
Target:  5'- cGGUAccGCGGGuCgucgaCGCGGgGGCCUCCu -3'
miRNA:   3'- -CCAUc-UGUCU-Gaa---GUGCCgUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 196920 0.67 0.984683
Target:  5'- uGG-AGGCcGAgagCACGGCGGUCUUCa -3'
miRNA:   3'- -CCaUCUGuCUgaaGUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 196897 0.66 0.990567
Target:  5'- ---cGACGG-CgUCAUGGcCAGCCUCa -3'
miRNA:   3'- ccauCUGUCuGaAGUGCC-GUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 196190 0.68 0.973828
Target:  5'- gGGgcGACGGcCgggUCccUGGCgAGCCUCCg -3'
miRNA:   3'- -CCauCUGUCuGa--AGu-GCCG-UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 193742 0.71 0.898224
Target:  5'- cGUGGGCGaacgcGGCcUCGCGGUcgucGCCUCCg -3'
miRNA:   3'- cCAUCUGU-----CUGaAGUGCCGu---CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 192616 0.72 0.840329
Target:  5'- ---cGGCGGGCg--ACGGCGGCCUCa -3'
miRNA:   3'- ccauCUGUCUGaagUGCCGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 191467 0.66 0.99104
Target:  5'- aGGUGGGCcgaguacgaggcgccGGACagCGCGGCGaccggcGCgCUCCc -3'
miRNA:   3'- -CCAUCUG---------------UCUGaaGUGCCGU------CG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 190949 0.7 0.932384
Target:  5'- cGGgcGcacGCGGGCgcccgcCGCGGCGGCCccUCCg -3'
miRNA:   3'- -CCauC---UGUCUGaa----GUGCCGUCGG--AGG- -5'
9085 5' -53.2 NC_002512.2 + 189508 0.69 0.945906
Target:  5'- aGGUGGAgacgcuccgggccCGGGCUcgcCGCGGuCGGCgUCCg -3'
miRNA:   3'- -CCAUCU-------------GUCUGAa--GUGCC-GUCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 189065 0.66 0.990567
Target:  5'- cGGccGGCGGcGCUcUCgACGGCgAGUCUCCg -3'
miRNA:   3'- -CCauCUGUC-UGA-AG-UGCCG-UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 188933 0.66 0.990567
Target:  5'- cGGUGG-CGGGg--CGCGGCGGUCgguUCCc -3'
miRNA:   3'- -CCAUCuGUCUgaaGUGCCGUCGG---AGG- -5'
9085 5' -53.2 NC_002512.2 + 188685 0.68 0.971115
Target:  5'- cGGUcucGgGGACgaUCACGGCGGCUccUCCg -3'
miRNA:   3'- -CCAuc-UgUCUGa-AGUGCCGUCGG--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.