miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 154342 0.66 0.992749
Target:  5'- cGGcgAGcccGCGGAUUUUuuugggacaagAUGGCGGCUUCCg -3'
miRNA:   3'- -CCa-UC---UGUCUGAAG-----------UGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 222314 0.67 0.984683
Target:  5'- cGG-AGGCgguaccggAGGCUgcgGCGGC-GCCUCCa -3'
miRNA:   3'- -CCaUCUG--------UCUGAag-UGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 2823 0.67 0.984683
Target:  5'- aGUAGACAuAUccCACGGCuccGGCCgUCCg -3'
miRNA:   3'- cCAUCUGUcUGaaGUGCCG---UCGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 179761 0.81 0.405042
Target:  5'- gGGUcucGCAGAUguaCACGGCGGCCUCCu -3'
miRNA:   3'- -CCAuc-UGUCUGaa-GUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 191467 0.66 0.99104
Target:  5'- aGGUGGGCcgaguacgaggcgccGGACagCGCGGCGaccggcGCgCUCCc -3'
miRNA:   3'- -CCAUCUG---------------UCUGaaGUGCCGU------CG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 196897 0.66 0.990567
Target:  5'- ---cGACGG-CgUCAUGGcCAGCCUCa -3'
miRNA:   3'- ccauCUGUCuGaAGUGCC-GUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 188933 0.66 0.990567
Target:  5'- cGGUGG-CGGGg--CGCGGCGGUCgguUCCc -3'
miRNA:   3'- -CCAUCuGUCUgaaGUGCCGUCGG---AGG- -5'
9085 5' -53.2 NC_002512.2 + 101775 0.66 0.990567
Target:  5'- cGGcgAGACGGcGCcguccUCGCGGCGgagcGCUUCCg -3'
miRNA:   3'- -CCa-UCUGUC-UGa----AGUGCCGU----CGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 26361 0.66 0.990567
Target:  5'- aGGUGGGCAGcuguguuuaggcGCaUUCGCaacGCAGCUUCg -3'
miRNA:   3'- -CCAUCUGUC------------UG-AAGUGc--CGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 121986 0.67 0.985373
Target:  5'- cGGcgGGACgagaGGAagaUCGCGGCggccaaggugacgacGGCCUCCa -3'
miRNA:   3'- -CCa-UCUG----UCUga-AGUGCCG---------------UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 158917 0.66 0.987899
Target:  5'- cGGccgAGuACGG-CUUCGgcgggggcgcCGGCGGCCUCUc -3'
miRNA:   3'- -CCa--UC-UGUCuGAAGU----------GCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 111219 0.66 0.990567
Target:  5'- --gGGACAGACgaUgACgGGCGGCCgggcgCCc -3'
miRNA:   3'- ccaUCUGUCUGa-AgUG-CCGUCGGa----GG- -5'
9085 5' -53.2 NC_002512.2 + 138674 0.66 0.992749
Target:  5'- cGGUGGACucGCUgaaCGugccccgggUGGCGGUCUCCc -3'
miRNA:   3'- -CCAUCUGucUGAa--GU---------GCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 122597 0.66 0.987899
Target:  5'- cGGggAGAuCAGGuucgUCuCGGCGGCCUCg -3'
miRNA:   3'- -CCa-UCU-GUCUga--AGuGCCGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 133598 0.66 0.992749
Target:  5'- cGgcGGCGGcc--CGCGGCAGCCcCCc -3'
miRNA:   3'- cCauCUGUCugaaGUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 161851 0.66 0.990567
Target:  5'- --cGGACAcGGCgu--CGGCGGuCCUCCc -3'
miRNA:   3'- ccaUCUGU-CUGaaguGCCGUC-GGAGG- -5'
9085 5' -53.2 NC_002512.2 + 199584 0.67 0.986364
Target:  5'- cGGUAccGCGGGuCgucgaCGCGGgGGCCUCCu -3'
miRNA:   3'- -CCAUc-UGUCU-Gaa---GUGCCgUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 196920 0.67 0.984683
Target:  5'- uGG-AGGCcGAgagCACGGCGGUCUUCa -3'
miRNA:   3'- -CCaUCUGuCUgaaGUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 127491 0.66 0.991715
Target:  5'- cGgcGACGucGGCUggaaccuCGGCGGCCUUCa -3'
miRNA:   3'- cCauCUGU--CUGAagu----GCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 189065 0.66 0.990567
Target:  5'- cGGccGGCGGcGCUcUCgACGGCgAGUCUCCg -3'
miRNA:   3'- -CCauCUGUC-UGA-AG-UGCCG-UCGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.