miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 53886 0.66 0.990567
Target:  5'- aGGgaccGACGGACgaggagaUCuCGGUcGCCUCCc -3'
miRNA:   3'- -CCau--CUGUCUGa------AGuGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 196897 0.66 0.990567
Target:  5'- ---cGACGG-CgUCAUGGcCAGCCUCa -3'
miRNA:   3'- ccauCUGUCuGaAGUGCC-GUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 111219 0.66 0.990567
Target:  5'- --gGGACAGACgaUgACgGGCGGCCgggcgCCc -3'
miRNA:   3'- ccaUCUGUCUGa-AgUG-CCGUCGGa----GG- -5'
9085 5' -53.2 NC_002512.2 + 74691 0.66 0.989298
Target:  5'- gGGaGGACGGGg--CGCGGUGuCCUCCg -3'
miRNA:   3'- -CCaUCUGUCUgaaGUGCCGUcGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 134133 0.66 0.989298
Target:  5'- --cAGGCGGcCgUCGCGGCGcGCgUCCc -3'
miRNA:   3'- ccaUCUGUCuGaAGUGCCGU-CGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 153421 0.66 0.989298
Target:  5'- aGGUGG-CGGAa-UgGCGGCAGgCCggCCg -3'
miRNA:   3'- -CCAUCuGUCUgaAgUGCCGUC-GGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 3061 0.66 0.989298
Target:  5'- cGgcGGCGGACgcggCgGCGGCGGCggCCa -3'
miRNA:   3'- cCauCUGUCUGaa--G-UGCCGUCGgaGG- -5'
9085 5' -53.2 NC_002512.2 + 83615 0.66 0.989298
Target:  5'- gGGuUGGACAcGGCgUUCA-GGCGGCCcaCCa -3'
miRNA:   3'- -CC-AUCUGU-CUG-AAGUgCCGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 14219 0.66 0.989298
Target:  5'- cGGU-GACGGAa---GCGGUAGCaCUUCu -3'
miRNA:   3'- -CCAuCUGUCUgaagUGCCGUCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 15457 0.66 0.988754
Target:  5'- cGUAGACggGGACgcgguccucgggCGCGGC-GCgCUCCg -3'
miRNA:   3'- cCAUCUG--UCUGaa----------GUGCCGuCG-GAGG- -5'
9085 5' -53.2 NC_002512.2 + 72162 0.66 0.987899
Target:  5'- -aUGGACGccGACUucuUCACGuaGCAGCCcgCCg -3'
miRNA:   3'- ccAUCUGU--CUGA---AGUGC--CGUCGGa-GG- -5'
9085 5' -53.2 NC_002512.2 + 68140 0.66 0.987899
Target:  5'- cGUAG-CAGGa---GCGGC-GCCUCCc -3'
miRNA:   3'- cCAUCuGUCUgaagUGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 122597 0.66 0.987899
Target:  5'- cGGggAGAuCAGGuucgUCuCGGCGGCCUCg -3'
miRNA:   3'- -CCa-UCU-GUCUga--AGuGCCGUCGGAGg -5'
9085 5' -53.2 NC_002512.2 + 158917 0.66 0.987899
Target:  5'- cGGccgAGuACGG-CUUCGgcgggggcgcCGGCGGCCUCUc -3'
miRNA:   3'- -CCa--UC-UGUCuGAAGU----------GCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 49298 0.66 0.987899
Target:  5'- uGUGuGACGGACgcCACGGCccugauagagAGCCaCCg -3'
miRNA:   3'- cCAU-CUGUCUGaaGUGCCG----------UCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 129096 0.67 0.986364
Target:  5'- --aGGACGGGCggcgUCuGCGGCGGgcgguCCUCUg -3'
miRNA:   3'- ccaUCUGUCUGa---AG-UGCCGUC-----GGAGG- -5'
9085 5' -53.2 NC_002512.2 + 134333 0.67 0.986364
Target:  5'- ---cGACGGAC-UCGCcGCGGCCgagcUCCa -3'
miRNA:   3'- ccauCUGUCUGaAGUGcCGUCGG----AGG- -5'
9085 5' -53.2 NC_002512.2 + 77081 0.67 0.986364
Target:  5'- cGG-GGACcGACgUUCAcCGGCAGCgcuUUCCg -3'
miRNA:   3'- -CCaUCUGuCUG-AAGU-GCCGUCG---GAGG- -5'
9085 5' -53.2 NC_002512.2 + 84766 0.67 0.986364
Target:  5'- aGGUAGGCguaguAGAUggccgugUCGgcCGGCAGCCgcgacgCCu -3'
miRNA:   3'- -CCAUCUG-----UCUGa------AGU--GCCGUCGGa-----GG- -5'
9085 5' -53.2 NC_002512.2 + 100002 0.67 0.986364
Target:  5'- cGGcgGGAUucGGCcgcgUCGCGuGCGGCCUCa -3'
miRNA:   3'- -CCa-UCUGu-CUGa---AGUGC-CGUCGGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.