miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 5' -53.2 NC_002512.2 + 77081 0.67 0.986364
Target:  5'- cGG-GGACcGACgUUCAcCGGCAGCgcuUUCCg -3'
miRNA:   3'- -CCaUCUGuCUG-AAGU-GCCGUCG---GAGG- -5'
9085 5' -53.2 NC_002512.2 + 121986 0.67 0.985373
Target:  5'- cGGcgGGACgagaGGAagaUCGCGGCggccaaggugacgacGGCCUCCa -3'
miRNA:   3'- -CCa-UCUG----UCUga-AGUGCCG---------------UCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 196920 0.67 0.984683
Target:  5'- uGG-AGGCcGAgagCACGGCGGUCUUCa -3'
miRNA:   3'- -CCaUCUGuCUgaaGUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 222314 0.67 0.984683
Target:  5'- cGG-AGGCgguaccggAGGCUgcgGCGGC-GCCUCCa -3'
miRNA:   3'- -CCaUCUG--------UCUGAag-UGCCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 2823 0.67 0.984683
Target:  5'- aGUAGACAuAUccCACGGCuccGGCCgUCCg -3'
miRNA:   3'- cCAUCUGUcUGaaGUGCCG---UCGG-AGG- -5'
9085 5' -53.2 NC_002512.2 + 117014 0.67 0.984683
Target:  5'- --aGGGCGGGCgcaagaUCAuCGGCGGCCgggaguucgCCg -3'
miRNA:   3'- ccaUCUGUCUGa-----AGU-GCCGUCGGa--------GG- -5'
9085 5' -53.2 NC_002512.2 + 100688 0.67 0.984683
Target:  5'- --cGGcCAG-Cg--GCGGCGGCCUCCu -3'
miRNA:   3'- ccaUCuGUCuGaagUGCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 51277 0.67 0.984683
Target:  5'- cGUGGACGcGGCgaccgagUCgGCGGCGGCCa-- -3'
miRNA:   3'- cCAUCUGU-CUGa------AG-UGCCGUCGGagg -5'
9085 5' -53.2 NC_002512.2 + 74381 0.67 0.984506
Target:  5'- aGGUcGAcCAGGuCUUCcaggagaGCGGCGGCCauggCCg -3'
miRNA:   3'- -CCAuCU-GUCU-GAAG-------UGCCGUCGGa---GG- -5'
9085 5' -53.2 NC_002512.2 + 163467 0.67 0.982848
Target:  5'- cGGUGGACgauaucaagauGGACaUCACGuacacGCAG-CUCCa -3'
miRNA:   3'- -CCAUCUG-----------UCUGaAGUGC-----CGUCgGAGG- -5'
9085 5' -53.2 NC_002512.2 + 42428 0.67 0.982848
Target:  5'- --cAGAgCGGACUcaCACgGGCcGCCUCCu -3'
miRNA:   3'- ccaUCU-GUCUGAa-GUG-CCGuCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 121283 0.67 0.982848
Target:  5'- --gGGACGGGCc-CGCGGCcGCCgcUCCc -3'
miRNA:   3'- ccaUCUGUCUGaaGUGCCGuCGG--AGG- -5'
9085 5' -53.2 NC_002512.2 + 39752 0.67 0.982848
Target:  5'- cGGUGGGcCAGGCgagcagCACG-CAGCUgCCg -3'
miRNA:   3'- -CCAUCU-GUCUGaa----GUGCcGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 5252 0.67 0.982848
Target:  5'- cGUAGGCcgAGGC--CGCGGCGGCgaCCc -3'
miRNA:   3'- cCAUCUG--UCUGaaGUGCCGUCGgaGG- -5'
9085 5' -53.2 NC_002512.2 + 45203 0.67 0.980853
Target:  5'- --gGGACcGGCggCGCGGaCGGCCgCCg -3'
miRNA:   3'- ccaUCUGuCUGaaGUGCC-GUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 57948 0.67 0.980853
Target:  5'- -aUAGACGGGCgcggCGCGGCGGgCg-- -3'
miRNA:   3'- ccAUCUGUCUGaa--GUGCCGUCgGagg -5'
9085 5' -53.2 NC_002512.2 + 80733 0.67 0.980853
Target:  5'- cGGgcGGCAccGGCccCGCGGCGGUC-CCg -3'
miRNA:   3'- -CCauCUGU--CUGaaGUGCCGUCGGaGG- -5'
9085 5' -53.2 NC_002512.2 + 105061 0.67 0.980853
Target:  5'- cGgcGACGGcgGCgugUCGgGGUAGUCUCCc -3'
miRNA:   3'- cCauCUGUC--UGa--AGUgCCGUCGGAGG- -5'
9085 5' -53.2 NC_002512.2 + 116899 0.67 0.980853
Target:  5'- gGGgccgGGGCGGGCUcCuCGGaCGGCgUCCc -3'
miRNA:   3'- -CCa---UCUGUCUGAaGuGCC-GUCGgAGG- -5'
9085 5' -53.2 NC_002512.2 + 74065 0.67 0.980853
Target:  5'- cGGga-GCGGAUcugCACGGacaCGGCCUCCu -3'
miRNA:   3'- -CCaucUGUCUGaa-GUGCC---GUCGGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.