miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9095 3' -53.4 NC_002512.2 + 16389 0.67 0.978449
Target:  5'- gCCCUCGAAGucGAcgGGCGCGcaGUGAg -3'
miRNA:   3'- gGGGGGCUUUuuCUagCCGUGC--CACU- -5'
9095 3' -53.4 NC_002512.2 + 67940 0.68 0.976111
Target:  5'- uCCCUCCGGacggaGAGGGGUCGcGC-CGGUu- -3'
miRNA:   3'- -GGGGGGCU-----UUUUCUAGC-CGuGCCAcu -5'
9095 3' -53.4 NC_002512.2 + 146138 0.68 0.976111
Target:  5'- aCCUgCCGccGGAAGAUCGGCauGCGGa-- -3'
miRNA:   3'- -GGGgGGCu-UUUUCUAGCCG--UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 172844 0.68 0.976111
Target:  5'- gCCCCCCGGuc---GUCGGaCGCGGc-- -3'
miRNA:   3'- -GGGGGGCUuuuucUAGCC-GUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 4632 0.68 0.976111
Target:  5'- cCCUCCUGGcgGAGAagGaGCACGG-GAg -3'
miRNA:   3'- -GGGGGGCUuuUUCUagC-CGUGCCaCU- -5'
9095 3' -53.4 NC_002512.2 + 6900 0.68 0.976111
Target:  5'- gCUCCCCGGcaggucgaGGAAGAcCGGCGCGuaGUGc -3'
miRNA:   3'- -GGGGGGCU--------UUUUCUaGCCGUGC--CACu -5'
9095 3' -53.4 NC_002512.2 + 63454 0.68 0.976111
Target:  5'- gCCCCCGGA--GGA-CGGCGgGGa-- -3'
miRNA:   3'- gGGGGGCUUuuUCUaGCCGUgCCacu -5'
9095 3' -53.4 NC_002512.2 + 130226 0.68 0.976111
Target:  5'- aCgCCCGAGcugccGGGGAUCGGCuCGGg-- -3'
miRNA:   3'- gGgGGGCUU-----UUUCUAGCCGuGCCacu -5'
9095 3' -53.4 NC_002512.2 + 86625 0.68 0.976111
Target:  5'- uUCCUCGuccuc-GUCGGCGCGGUGu -3'
miRNA:   3'- gGGGGGCuuuuucUAGCCGUGCCACu -5'
9095 3' -53.4 NC_002512.2 + 29339 0.68 0.976111
Target:  5'- uCCCCCCGAuAccgcgaccgcGAGA-CGGaCACGGa-- -3'
miRNA:   3'- -GGGGGGCUuU----------UUCUaGCC-GUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 113441 0.68 0.973593
Target:  5'- gUCCCCGAGcuGGGU-GGCGaucaGGUGGa -3'
miRNA:   3'- gGGGGGCUUuuUCUAgCCGUg---CCACU- -5'
9095 3' -53.4 NC_002512.2 + 102986 0.68 0.973593
Target:  5'- uCCCCCCGccgcGAGAGAagaGGCGCuGGaGAa -3'
miRNA:   3'- -GGGGGGCu---UUUUCUag-CCGUG-CCaCU- -5'
9095 3' -53.4 NC_002512.2 + 3358 0.68 0.973593
Target:  5'- uCCUCCCGAucGAGGAcggCGGCAgGGc-- -3'
miRNA:   3'- -GGGGGGCUu-UUUCUa--GCCGUgCCacu -5'
9095 3' -53.4 NC_002512.2 + 37438 0.68 0.973593
Target:  5'- cCUCCCCGAGAGAGAccCGacccCGCGGggGAa -3'
miRNA:   3'- -GGGGGGCUUUUUCUa-GCc---GUGCCa-CU- -5'
9095 3' -53.4 NC_002512.2 + 187141 0.68 0.973331
Target:  5'- gCCCCUGuuccuGGGGUCGGggaggucCAUGGUGGa -3'
miRNA:   3'- gGGGGGCuuu--UUCUAGCC-------GUGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 143675 0.68 0.973331
Target:  5'- cCUCCCCGAAGccgggcgGGGuGUCgGGCACGGa-- -3'
miRNA:   3'- -GGGGGGCUUU-------UUC-UAG-CCGUGCCacu -5'
9095 3' -53.4 NC_002512.2 + 468 0.68 0.973331
Target:  5'- gCCCCCgGggGAGGAggacCGGCccucacgACGGg-- -3'
miRNA:   3'- -GGGGGgCuuUUUCUa---GCCG-------UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 229871 0.68 0.973331
Target:  5'- gCCCCCgGggGAGGAggacCGGCccucacgACGGg-- -3'
miRNA:   3'- -GGGGGgCuuUUUCUa---GCCG-------UGCCacu -5'
9095 3' -53.4 NC_002512.2 + 148003 0.68 0.972802
Target:  5'- -aCUCCGGGAGGGAaaaCGGCgaggguagaaacgaGCGGUGAg -3'
miRNA:   3'- ggGGGGCUUUUUCUa--GCCG--------------UGCCACU- -5'
9095 3' -53.4 NC_002512.2 + 144245 0.68 0.970888
Target:  5'- aCCCCCGuGGAAAGugcggCGGCAgCGGg-- -3'
miRNA:   3'- gGGGGGC-UUUUUCua---GCCGU-GCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.