miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 224204 0.67 0.95295
Target:  5'- -cACGGACGCGGggaCGCcg-GGGCGUUu -3'
miRNA:   3'- uuUGCUUGCGCCa--GCGcagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 12001 0.67 0.95295
Target:  5'- cGACG-ACGCGGcCGCcgaucUCGGACG-Cg -3'
miRNA:   3'- uUUGCuUGCGCCaGCGc----AGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 131977 0.67 0.95295
Target:  5'- uAGGCGAagaACGaGGUCGCGUgggccgcccCGGGCGcCg -3'
miRNA:   3'- -UUUGCU---UGCgCCAGCGCA---------GCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 89798 0.67 0.951775
Target:  5'- cGACaGGACGgGGUCGCcgaugacgccgagaGGACGUCg -3'
miRNA:   3'- uUUG-CUUGCgCCAGCGcag-----------CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 34927 0.67 0.948957
Target:  5'- gAGACGAcgGCGgGGUCGCGgc-GACGg- -3'
miRNA:   3'- -UUUGCU--UGCgCCAGCGCagcCUGCag -5'
9101 3' -55.5 NC_002512.2 + 32102 0.67 0.948957
Target:  5'- cGggUGuccuCGCGGUCGagGUCGGGauCGUCg -3'
miRNA:   3'- -UuuGCuu--GCGCCAGCg-CAGCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 31808 0.67 0.948957
Target:  5'- gAGACGccggGGCGCGGUcgaggggaCGCG-CGaGACGUCc -3'
miRNA:   3'- -UUUGC----UUGCGCCA--------GCGCaGC-CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 129850 0.67 0.948957
Target:  5'- gAGGCGGAgGCGGagGCGgaGGACGg- -3'
miRNA:   3'- -UUUGCUUgCGCCagCGCagCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 103353 0.67 0.948957
Target:  5'- cGACGAGucCGgGGcCGCgGUCGGGuCGUCc -3'
miRNA:   3'- uUUGCUU--GCgCCaGCG-CAGCCU-GCAG- -5'
9101 3' -55.5 NC_002512.2 + 2812 0.67 0.948957
Target:  5'- cGGCGGgacccgGCGCGGgCGCGggccCGGACGa- -3'
miRNA:   3'- uUUGCU------UGCGCCaGCGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 77943 0.67 0.948957
Target:  5'- -uACGAuGCGCGaGUCGCGagcCGGGuuCGUCu -3'
miRNA:   3'- uuUGCU-UGCGC-CAGCGCa--GCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 113886 0.67 0.948957
Target:  5'- cGAGCGAAaGCGGUUGCaggCGcagaaGACGUCg -3'
miRNA:   3'- -UUUGCUUgCGCCAGCGca-GC-----CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 191408 0.67 0.948957
Target:  5'- aAAAUGAGCGCcGUgGCGgccCGGGCGg- -3'
miRNA:   3'- -UUUGCUUGCGcCAgCGCa--GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 178008 0.67 0.948957
Target:  5'- -cGCGGAUGUGGUCcgccuGCGacaGGACGUUc -3'
miRNA:   3'- uuUGCUUGCGCCAG-----CGCag-CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 114033 0.67 0.948957
Target:  5'- --cCGGGCGCGGUgGaCGUagaGGGCGg- -3'
miRNA:   3'- uuuGCUUGCGCCAgC-GCAg--CCUGCag -5'
9101 3' -55.5 NC_002512.2 + 224022 0.67 0.947717
Target:  5'- cGGACGAcgcccgggacuccgACGgGGcCGCcggggacgacucGUCGGGCGUCu -3'
miRNA:   3'- -UUUGCU--------------UGCgCCaGCG------------CAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 98105 0.67 0.944746
Target:  5'- gGGACG-GCGCGGgacgaccucgUCGCGcUCuGGACGUUc -3'
miRNA:   3'- -UUUGCuUGCGCC----------AGCGC-AG-CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 108335 0.67 0.944746
Target:  5'- cGGGCGGucgGCGCGGcaugCGCGgaCGGACGg- -3'
miRNA:   3'- -UUUGCU---UGCGCCa---GCGCa-GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 130282 0.67 0.944746
Target:  5'- cGACGAGCGCGGg-GCccgGGACGUg -3'
miRNA:   3'- uUUGCUUGCGCCagCGcagCCUGCAg -5'
9101 3' -55.5 NC_002512.2 + 133416 0.67 0.944746
Target:  5'- gAGACGGccGCGCGGUCcgcGCGUUugguuccgggGGACGg- -3'
miRNA:   3'- -UUUGCU--UGCGCCAG---CGCAG----------CCUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.