miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 184965 0.66 0.96365
Target:  5'- cAugGAGCGCGuccGcCGCG-CGGcCGUCg -3'
miRNA:   3'- uUugCUUGCGC---CaGCGCaGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 183959 0.66 0.96365
Target:  5'- ---gGGACGCG--CGC-UCGGGCGUCg -3'
miRNA:   3'- uuugCUUGCGCcaGCGcAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 207928 0.66 0.96365
Target:  5'- cGAACGGGCcCGGUgGUGcUCGGGucCGUCc -3'
miRNA:   3'- -UUUGCUUGcGCCAgCGC-AGCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 57194 0.66 0.96365
Target:  5'- -cGCGGcaGCGGUCGCG-CaGGACGg- -3'
miRNA:   3'- uuUGCUugCGCCAGCGCaG-CCUGCag -5'
9101 3' -55.5 NC_002512.2 + 103203 0.66 0.962664
Target:  5'- cGGCGAGCGgGGguauccgaggcggcUCGCGUCGccgccCGUCg -3'
miRNA:   3'- uUUGCUUGCgCC--------------AGCGCAGCcu---GCAG- -5'
9101 3' -55.5 NC_002512.2 + 202519 0.66 0.960293
Target:  5'- gAGGCGGAgGCGG-CgGCGggggCGGACGa- -3'
miRNA:   3'- -UUUGCUUgCGCCaG-CGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 155324 0.66 0.960293
Target:  5'- ---aGAGCGCccaGGUCGCGgCGGACc-- -3'
miRNA:   3'- uuugCUUGCG---CCAGCGCaGCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 129650 0.66 0.960293
Target:  5'- ---aGGACGCGGUCGCcgcccGUC-GACGcCg -3'
miRNA:   3'- uuugCUUGCGCCAGCG-----CAGcCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 191584 0.66 0.959245
Target:  5'- -uACGAgagccuguucggucGCGCGGUCGaGUCcucGGCGUCu -3'
miRNA:   3'- uuUGCU--------------UGCGCCAGCgCAGc--CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 30410 0.67 0.956728
Target:  5'- uGACGGACGgGGaCGC---GGGCGUCg -3'
miRNA:   3'- uUUGCUUGCgCCaGCGcagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 5076 0.67 0.956728
Target:  5'- -cGCG-GCGuUGGUCGuCGUCGccGGCGUCg -3'
miRNA:   3'- uuUGCuUGC-GCCAGC-GCAGC--CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 226762 0.67 0.956728
Target:  5'- cGGACG-ACGCGGaggGCGa-GGACGUCu -3'
miRNA:   3'- -UUUGCuUGCGCCag-CGCagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 3261 0.67 0.956728
Target:  5'- -cGCGGGCuCGGUCcCGUCGcuGCGUCg -3'
miRNA:   3'- uuUGCUUGcGCCAGcGCAGCc-UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 4451 0.67 0.956728
Target:  5'- --cCGGGCGCGG--GgGUCGG-CGUCg -3'
miRNA:   3'- uuuGCUUGCGCCagCgCAGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 133796 0.67 0.956728
Target:  5'- cGGCGGggACGaCGGUCGCGcCGGguGCGg- -3'
miRNA:   3'- uUUGCU--UGC-GCCAGCGCaGCC--UGCag -5'
9101 3' -55.5 NC_002512.2 + 45382 0.67 0.955617
Target:  5'- cGACGAggACGCGGgccgggacugucgcUCGUG-CGGGCGcUCg -3'
miRNA:   3'- uUUGCU--UGCGCC--------------AGCGCaGCCUGC-AG- -5'
9101 3' -55.5 NC_002512.2 + 75201 0.67 0.95295
Target:  5'- cGGACGGcCGCucggagccggacGGUCGCccgacGUCGGACGgUCg -3'
miRNA:   3'- -UUUGCUuGCG------------CCAGCG-----CAGCCUGC-AG- -5'
9101 3' -55.5 NC_002512.2 + 15459 0.67 0.95295
Target:  5'- uAGACGGggACGCGGUC-C-UCGGGCG-Cg -3'
miRNA:   3'- -UUUGCU--UGCGCCAGcGcAGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 12001 0.67 0.95295
Target:  5'- cGACG-ACGCGGcCGCcgaucUCGGACG-Cg -3'
miRNA:   3'- uUUGCuUGCGCCaGCGc----AGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 42995 0.67 0.95295
Target:  5'- cGACGAGggccagcaggcUGCGGUCcgagGCGUUGGGCagGUCg -3'
miRNA:   3'- uUUGCUU-----------GCGCCAG----CGCAGCCUG--CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.