miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 30410 0.67 0.956728
Target:  5'- uGACGGACGgGGaCGC---GGGCGUCg -3'
miRNA:   3'- uUUGCUUGCgCCaGCGcagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 31664 0.75 0.57631
Target:  5'- -cGCGGGCGCGGcCGUGguggCGGACGg- -3'
miRNA:   3'- uuUGCUUGCGCCaGCGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 31808 0.67 0.948957
Target:  5'- gAGACGccggGGCGCGGUcgaggggaCGCG-CGaGACGUCc -3'
miRNA:   3'- -UUUGC----UUGCGCCA--------GCGCaGC-CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 32102 0.67 0.948957
Target:  5'- cGggUGuccuCGCGGUCGagGUCGGGauCGUCg -3'
miRNA:   3'- -UuuGCuu--GCGCCAGCg-CAGCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 32395 0.66 0.966803
Target:  5'- -cACGAACGC-GUCGUGUCcGAUGg- -3'
miRNA:   3'- uuUGCUUGCGcCAGCGCAGcCUGCag -5'
9101 3' -55.5 NC_002512.2 + 32577 0.69 0.902999
Target:  5'- -cGCGggUGCcggGGUCGUGUCGGAa--- -3'
miRNA:   3'- uuUGCuuGCG---CCAGCGCAGCCUgcag -5'
9101 3' -55.5 NC_002512.2 + 33643 0.71 0.806439
Target:  5'- gAGGCGcGCGCGGgCGCGgCGGACaggGUCu -3'
miRNA:   3'- -UUUGCuUGCGCCaGCGCaGCCUG---CAG- -5'
9101 3' -55.5 NC_002512.2 + 34039 0.7 0.847353
Target:  5'- -cGCGAGCGcCGGUUGC-UCGaGGCGUg -3'
miRNA:   3'- uuUGCUUGC-GCCAGCGcAGC-CUGCAg -5'
9101 3' -55.5 NC_002512.2 + 34927 0.67 0.948957
Target:  5'- gAGACGAcgGCGgGGUCGCGgc-GACGg- -3'
miRNA:   3'- -UUUGCU--UGCgCCAGCGCagcCUGCag -5'
9101 3' -55.5 NC_002512.2 + 36454 0.72 0.724112
Target:  5'- cGGCGGcCGCGGUCGCGcUCGuaguCGUCg -3'
miRNA:   3'- uUUGCUuGCGCCAGCGC-AGCcu--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 37470 0.67 0.939857
Target:  5'- aGAACGAGaC-CGGaCGCGUCGGaaggacgguaaacGCGUCu -3'
miRNA:   3'- -UUUGCUU-GcGCCaGCGCAGCC-------------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 42995 0.67 0.95295
Target:  5'- cGACGAGggccagcaggcUGCGGUCcgagGCGUUGGGCagGUCg -3'
miRNA:   3'- uUUGCUU-----------GCGCCAG----CGCAGCCUG--CAG- -5'
9101 3' -55.5 NC_002512.2 + 45382 0.67 0.955617
Target:  5'- cGACGAggACGCGGgccgggacugucgcUCGUG-CGGGCGcUCg -3'
miRNA:   3'- uUUGCU--UGCGCC--------------AGCGCaGCCUGC-AG- -5'
9101 3' -55.5 NC_002512.2 + 48335 0.68 0.909001
Target:  5'- -cACGAACGaGGacaUCGCG-CGGGCGUg -3'
miRNA:   3'- uuUGCUUGCgCC---AGCGCaGCCUGCAg -5'
9101 3' -55.5 NC_002512.2 + 57194 0.66 0.96365
Target:  5'- -cGCGGcaGCGGUCGCG-CaGGACGg- -3'
miRNA:   3'- uuUGCUugCGCCAGCGCaG-CCUGCag -5'
9101 3' -55.5 NC_002512.2 + 57949 0.78 0.410269
Target:  5'- uAGACGGGCGCGG-CGCGgCGGGCGa- -3'
miRNA:   3'- -UUUGCUUGCGCCaGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 67718 0.73 0.695024
Target:  5'- cGACGGACGCGGccgcuuUCGCGgUCGG-CGUg -3'
miRNA:   3'- uUUGCUUGCGCC------AGCGC-AGCCuGCAg -5'
9101 3' -55.5 NC_002512.2 + 67946 0.67 0.935656
Target:  5'- cGGACGGAgaGgGGUCGCGcCGGuucgccgugGCGUCc -3'
miRNA:   3'- -UUUGCUUg-CgCCAGCGCaGCC---------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 71567 0.74 0.655583
Target:  5'- ---gGAGCGCGGacUCGCGcCGGACGa- -3'
miRNA:   3'- uuugCUUGCGCC--AGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 74887 0.68 0.914213
Target:  5'- cGACGGGCGaCGGauccucgUCGCGaCGGACG-Cg -3'
miRNA:   3'- uUUGCUUGC-GCC-------AGCGCaGCCUGCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.