miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 33643 0.71 0.806439
Target:  5'- gAGGCGcGCGCGGgCGCGgCGGACaggGUCu -3'
miRNA:   3'- -UUUGCuUGCGCCaGCGCaGCCUG---CAG- -5'
9101 3' -55.5 NC_002512.2 + 112939 0.71 0.806439
Target:  5'- -uGCGGAUGgcgcccCGGUCGagccccgaguCGUCGGGCGUCa -3'
miRNA:   3'- uuUGCUUGC------GCCAGC----------GCAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 195661 0.71 0.812412
Target:  5'- gGAGCuGAACGUcaccgagacggagaGGUaCGUGUUGGACGUCc -3'
miRNA:   3'- -UUUG-CUUGCG--------------CCA-GCGCAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 154736 0.71 0.814949
Target:  5'- -uGCGucCGCGGcCGCGUCcgacGGCGUCg -3'
miRNA:   3'- uuUGCuuGCGCCaGCGCAGc---CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 94062 0.71 0.814949
Target:  5'- cGACGGGCGCGG-CGggaacgggacCGUCGG-CGUCc -3'
miRNA:   3'- uUUGCUUGCGCCaGC----------GCAGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 102486 0.71 0.814949
Target:  5'- -cGCGGugGCGGUCccgcagGCGgCGGACGg- -3'
miRNA:   3'- uuUGCUugCGCCAG------CGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 93059 0.71 0.814949
Target:  5'- gAGACGAcgcCGCGGggCGuCGUCGuGACGUUg -3'
miRNA:   3'- -UUUGCUu--GCGCCa-GC-GCAGC-CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 95201 0.7 0.831492
Target:  5'- aGGACGucCGCGGUCGCG-CGucCGUUg -3'
miRNA:   3'- -UUUGCuuGCGCCAGCGCaGCcuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 79608 0.7 0.831492
Target:  5'- cGGGCGGcaGCGCcgGGUCGCGguacUCGG-CGUCg -3'
miRNA:   3'- -UUUGCU--UGCG--CCAGCGC----AGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 11349 0.7 0.839511
Target:  5'- gAGGCGAgaGCGCaaacuguUCGCGUCGGACGa- -3'
miRNA:   3'- -UUUGCU--UGCGcc-----AGCGCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 24309 0.7 0.839511
Target:  5'- gGGGCGAACuGCGGUCccccgGCGgUCGGGCuGUUg -3'
miRNA:   3'- -UUUGCUUG-CGCCAG-----CGC-AGCCUG-CAG- -5'
9101 3' -55.5 NC_002512.2 + 189629 0.7 0.84267
Target:  5'- -cGCGAucguCGCGGUCGgcuuCGUCGGgacgcgccgacaccgGCGUCg -3'
miRNA:   3'- uuUGCUu---GCGCCAGC----GCAGCC---------------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 107083 0.7 0.847353
Target:  5'- --uCGGGgGCGGUCGgGUCGGuCGg- -3'
miRNA:   3'- uuuGCUUgCGCCAGCgCAGCCuGCag -5'
9101 3' -55.5 NC_002512.2 + 34039 0.7 0.847353
Target:  5'- -cGCGAGCGcCGGUUGC-UCGaGGCGUg -3'
miRNA:   3'- uuUGCUUGC-GCCAGCGcAGC-CUGCAg -5'
9101 3' -55.5 NC_002512.2 + 101582 0.7 0.85501
Target:  5'- cGAGCGuagggucccCGCGGUCGUG-CGGGCGg- -3'
miRNA:   3'- -UUUGCuu-------GCGCCAGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 219467 0.7 0.862477
Target:  5'- cGGCGAcgACGCGGUCGUGccccUgGGGCGg- -3'
miRNA:   3'- uUUGCU--UGCGCCAGCGC----AgCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 88693 0.7 0.862477
Target:  5'- -cGCGGACGCGGgacguUCGCG-CGGAgGg- -3'
miRNA:   3'- uuUGCUUGCGCC-----AGCGCaGCCUgCag -5'
9101 3' -55.5 NC_002512.2 + 198959 0.7 0.862477
Target:  5'- cAGCGGucGCGUGGcgUCGCGUCGcguGAUGUCc -3'
miRNA:   3'- uUUGCU--UGCGCC--AGCGCAGC---CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 4217 0.69 0.869748
Target:  5'- gGAGCGGcCGCGGggaGCG--GGACGUCg -3'
miRNA:   3'- -UUUGCUuGCGCCag-CGCagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 102342 0.69 0.869748
Target:  5'- cGACGAGC-CGGguccggGCGUCGGuCGUCc -3'
miRNA:   3'- uUUGCUUGcGCCag----CGCAGCCuGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.