miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 118544 1.08 0.006272
Target:  5'- gAAACGAACGCGGUCGCGUCGGACGUCg -3'
miRNA:   3'- -UUUGCUUGCGCCAGCGCAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 87273 0.79 0.385522
Target:  5'- gGAGCGAacACGCGGUCGUGgggUGGACGg- -3'
miRNA:   3'- -UUUGCU--UGCGCCAGCGCa--GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 57949 0.78 0.410269
Target:  5'- uAGACGGGCGCGG-CGCGgCGGGCGa- -3'
miRNA:   3'- -UUUGCUUGCGCCaGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 76591 0.76 0.508751
Target:  5'- gAGAUGAACGCcg--GCGUCGGACGUCu -3'
miRNA:   3'- -UUUGCUUGCGccagCGCAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 31664 0.75 0.57631
Target:  5'- -cGCGGGCGCGGcCGUGguggCGGACGg- -3'
miRNA:   3'- uuUGCUUGCGCCaGCGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 75244 0.75 0.586156
Target:  5'- uGACGAGCGCGGcCGCGUCc--CGUCc -3'
miRNA:   3'- uUUGCUUGCGCCaGCGCAGccuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 198041 0.75 0.605935
Target:  5'- cGAGgGGACGCGGUCGUcacagGGACGUCu -3'
miRNA:   3'- -UUUgCUUGCGCCAGCGcag--CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 200751 0.74 0.645659
Target:  5'- --cCGGGCGUGGUCGuCGUacaUGGugGUCg -3'
miRNA:   3'- uuuGCUUGCGCCAGC-GCA---GCCugCAG- -5'
9101 3' -55.5 NC_002512.2 + 189341 0.74 0.645659
Target:  5'- -cGCGucucGCGCGGUgGCGUCugugagugacGGGCGUCg -3'
miRNA:   3'- uuUGCu---UGCGCCAgCGCAG----------CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 71567 0.74 0.655583
Target:  5'- ---gGAGCGCGGacUCGCGcCGGACGa- -3'
miRNA:   3'- uuugCUUGCGCC--AGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 2096 0.73 0.685218
Target:  5'- gGAGCGGGCGguaCGGcCGCGgcucggucgCGGGCGUCg -3'
miRNA:   3'- -UUUGCUUGC---GCCaGCGCa--------GCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 67718 0.73 0.695024
Target:  5'- cGACGGACGCGGccgcuuUCGCGgUCGG-CGUg -3'
miRNA:   3'- uUUGCUUGCGCC------AGCGC-AGCCuGCAg -5'
9101 3' -55.5 NC_002512.2 + 36454 0.72 0.724112
Target:  5'- cGGCGGcCGCGGUCGCGcUCGuaguCGUCg -3'
miRNA:   3'- uUUGCUuGCGCCAGCGC-AGCcu--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 14963 0.72 0.73367
Target:  5'- aGGACGAAcCGCGGcCGCGgUGGACG-Cg -3'
miRNA:   3'- -UUUGCUU-GCGCCaGCGCaGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 109991 0.72 0.761812
Target:  5'- aGAACaGGAUGCaGGcCGUGUgGGGCGUCa -3'
miRNA:   3'- -UUUG-CUUGCG-CCaGCGCAgCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 77556 0.72 0.770987
Target:  5'- -cGCGGACgGCgGGUCGCccaCGGGCGUCc -3'
miRNA:   3'- uuUGCUUG-CG-CCAGCGca-GCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 87583 0.71 0.780046
Target:  5'- cAGACG-GCGaCGGaCGCGUCGGAuccccCGUCg -3'
miRNA:   3'- -UUUGCuUGC-GCCaGCGCAGCCU-----GCAG- -5'
9101 3' -55.5 NC_002512.2 + 193744 0.71 0.788979
Target:  5'- uGGGCGAACGCGGcCuCG-CGGuCGUCg -3'
miRNA:   3'- -UUUGCUUGCGCCaGcGCaGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 112462 0.71 0.79778
Target:  5'- ----aGACGCGGUCGCGcUCGGAgCGg- -3'
miRNA:   3'- uuugcUUGCGCCAGCGC-AGCCU-GCag -5'
9101 3' -55.5 NC_002512.2 + 216023 0.71 0.803856
Target:  5'- uGAGCGuAGCGCGGUauagggcgcgcgagUGCGaCGGGCGUUc -3'
miRNA:   3'- -UUUGC-UUGCGCCA--------------GCGCaGCCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.