miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 88693 0.7 0.862477
Target:  5'- -cGCGGACGCGGgacguUCGCG-CGGAgGg- -3'
miRNA:   3'- uuUGCUUGCGCC-----AGCGCaGCCUgCag -5'
9101 3' -55.5 NC_002512.2 + 94062 0.71 0.814949
Target:  5'- cGACGGGCGCGG-CGggaacgggacCGUCGG-CGUCc -3'
miRNA:   3'- uUUGCUUGCGCCaGC----------GCAGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 79608 0.7 0.831492
Target:  5'- cGGGCGGcaGCGCcgGGUCGCGguacUCGG-CGUCg -3'
miRNA:   3'- -UUUGCU--UGCG--CCAGCGC----AGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 95201 0.7 0.831492
Target:  5'- aGGACGucCGCGGUCGCG-CGucCGUUg -3'
miRNA:   3'- -UUUGCuuGCGCCAGCGCaGCcuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 11349 0.7 0.839511
Target:  5'- gAGGCGAgaGCGCaaacuguUCGCGUCGGACGa- -3'
miRNA:   3'- -UUUGCU--UGCGcc-----AGCGCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 24309 0.7 0.839511
Target:  5'- gGGGCGAACuGCGGUCccccgGCGgUCGGGCuGUUg -3'
miRNA:   3'- -UUUGCUUG-CGCCAG-----CGC-AGCCUG-CAG- -5'
9101 3' -55.5 NC_002512.2 + 107083 0.7 0.847353
Target:  5'- --uCGGGgGCGGUCGgGUCGGuCGg- -3'
miRNA:   3'- uuuGCUUgCGCCAGCgCAGCCuGCag -5'
9101 3' -55.5 NC_002512.2 + 34039 0.7 0.847353
Target:  5'- -cGCGAGCGcCGGUUGC-UCGaGGCGUg -3'
miRNA:   3'- uuUGCUUGC-GCCAGCGcAGC-CUGCAg -5'
9101 3' -55.5 NC_002512.2 + 101582 0.7 0.85501
Target:  5'- cGAGCGuagggucccCGCGGUCGUG-CGGGCGg- -3'
miRNA:   3'- -UUUGCuu-------GCGCCAGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 93059 0.71 0.814949
Target:  5'- gAGACGAcgcCGCGGggCGuCGUCGuGACGUUg -3'
miRNA:   3'- -UUUGCUu--GCGCCa-GC-GCAGC-CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 112939 0.71 0.806439
Target:  5'- -uGCGGAUGgcgcccCGGUCGagccccgaguCGUCGGGCGUCa -3'
miRNA:   3'- uuUGCUUGC------GCCAGC----------GCAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 33643 0.71 0.806439
Target:  5'- gAGGCGcGCGCGGgCGCGgCGGACaggGUCu -3'
miRNA:   3'- -UUUGCuUGCGCCaGCGCaGCCUG---CAG- -5'
9101 3' -55.5 NC_002512.2 + 57949 0.78 0.410269
Target:  5'- uAGACGGGCGCGG-CGCGgCGGGCGa- -3'
miRNA:   3'- -UUUGCUUGCGCCaGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 31664 0.75 0.57631
Target:  5'- -cGCGGGCGCGGcCGUGguggCGGACGg- -3'
miRNA:   3'- uuUGCUUGCGCCaGCGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 71567 0.74 0.655583
Target:  5'- ---gGAGCGCGGacUCGCGcCGGACGa- -3'
miRNA:   3'- uuugCUUGCGCC--AGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 2096 0.73 0.685218
Target:  5'- gGAGCGGGCGguaCGGcCGCGgcucggucgCGGGCGUCg -3'
miRNA:   3'- -UUUGCUUGC---GCCaGCGCa--------GCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 67718 0.73 0.695024
Target:  5'- cGACGGACGCGGccgcuuUCGCGgUCGG-CGUg -3'
miRNA:   3'- uUUGCUUGCGCC------AGCGC-AGCCuGCAg -5'
9101 3' -55.5 NC_002512.2 + 36454 0.72 0.724112
Target:  5'- cGGCGGcCGCGGUCGCGcUCGuaguCGUCg -3'
miRNA:   3'- uUUGCUuGCGCCAGCGC-AGCcu--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 14963 0.72 0.73367
Target:  5'- aGGACGAAcCGCGGcCGCGgUGGACG-Cg -3'
miRNA:   3'- -UUUGCUU-GCGCCaGCGCaGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 109991 0.72 0.761812
Target:  5'- aGAACaGGAUGCaGGcCGUGUgGGGCGUCa -3'
miRNA:   3'- -UUUG-CUUGCG-CCaGCGCAgCCUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.