miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 124312 0.66 0.972521
Target:  5'- gGAGCuGAuCGgGGcCGCGgCGGACGUg -3'
miRNA:   3'- -UUUG-CUuGCgCCaGCGCaGCCUGCAg -5'
9101 3' -55.5 NC_002512.2 + 178008 0.67 0.948957
Target:  5'- -cGCGGAUGUGGUCcgccuGCGacaGGACGUUc -3'
miRNA:   3'- uuUGCUUGCGCCAG-----CGCag-CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 77943 0.67 0.948957
Target:  5'- -uACGAuGCGCGaGUCGCGagcCGGGuuCGUCu -3'
miRNA:   3'- uuUGCU-UGCGC-CAGCGCa--GCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 118544 1.08 0.006272
Target:  5'- gAAACGAACGCGGUCGCGUCGGACGUCg -3'
miRNA:   3'- -UUUGCUUGCGCCAGCGCAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 223916 0.66 0.966803
Target:  5'- -cGCGGGCGagaGGUCGaGcCGGACGg- -3'
miRNA:   3'- uuUGCUUGCg--CCAGCgCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 207928 0.66 0.96365
Target:  5'- cGAACGGGCcCGGUgGUGcUCGGGucCGUCc -3'
miRNA:   3'- -UUUGCUUGcGCCAgCGC-AGCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 183959 0.66 0.96365
Target:  5'- ---gGGACGCG--CGC-UCGGGCGUCg -3'
miRNA:   3'- uuugCUUGCGCcaGCGcAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 202519 0.66 0.960293
Target:  5'- gAGGCGGAgGCGG-CgGCGggggCGGACGa- -3'
miRNA:   3'- -UUUGCUUgCGCCaG-CGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 226762 0.67 0.956728
Target:  5'- cGGACG-ACGCGGaggGCGa-GGACGUCu -3'
miRNA:   3'- -UUUGCuUGCGCCag-CGCagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 191408 0.67 0.948957
Target:  5'- aAAAUGAGCGCcGUgGCGgccCGGGCGg- -3'
miRNA:   3'- -UUUGCUUGCGcCAgCGCa--GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 131977 0.67 0.95295
Target:  5'- uAGGCGAagaACGaGGUCGCGUgggccgcccCGGGCGcCg -3'
miRNA:   3'- -UUUGCU---UGCgCCAGCGCA---------GCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 191584 0.66 0.959245
Target:  5'- -uACGAgagccuguucggucGCGCGGUCGaGUCcucGGCGUCu -3'
miRNA:   3'- uuUGCU--------------UGCGCCAGCgCAGc--CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 89652 0.66 0.972521
Target:  5'- cGGACGAA-GCGGUCGaCGUacucGACGUg -3'
miRNA:   3'- -UUUGCUUgCGCCAGC-GCAgc--CUGCAg -5'
9101 3' -55.5 NC_002512.2 + 89798 0.67 0.951775
Target:  5'- cGACaGGACGgGGUCGCcgaugacgccgagaGGACGUCg -3'
miRNA:   3'- uUUG-CUUGCgCCAGCGcag-----------CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 127636 0.66 0.969759
Target:  5'- cGAGCGAAagggauCG-GGUCGC-UCGGACGg- -3'
miRNA:   3'- -UUUGCUU------GCgCCAGCGcAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 129650 0.66 0.960293
Target:  5'- ---aGGACGCGGUCGCcgcccGUC-GACGcCg -3'
miRNA:   3'- uuugCUUGCGCCAGCG-----CAGcCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 113886 0.67 0.948957
Target:  5'- cGAGCGAAaGCGGUUGCaggCGcagaaGACGUCg -3'
miRNA:   3'- -UUUGCUUgCGCCAGCGca-GC-----CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 114033 0.67 0.948957
Target:  5'- --cCGGGCGCGGUgGaCGUagaGGGCGg- -3'
miRNA:   3'- uuuGCUUGCGCCAgC-GCAg--CCUGCag -5'
9101 3' -55.5 NC_002512.2 + 119763 0.66 0.966803
Target:  5'- cGAGCGAcgcguCGCGGUCGaCGgCGGGgacccagaacCGUCu -3'
miRNA:   3'- -UUUGCUu----GCGCCAGC-GCaGCCU----------GCAG- -5'
9101 3' -55.5 NC_002512.2 + 184965 0.66 0.96365
Target:  5'- cAugGAGCGCGuccGcCGCG-CGGcCGUCg -3'
miRNA:   3'- uUugCUUGCGC---CaGCGCaGCCuGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.