miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 2096 0.73 0.685218
Target:  5'- gGAGCGGGCGguaCGGcCGCGgcucggucgCGGGCGUCg -3'
miRNA:   3'- -UUUGCUUGC---GCCaGCGCa--------GCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 2812 0.67 0.948957
Target:  5'- cGGCGGgacccgGCGCGGgCGCGggccCGGACGa- -3'
miRNA:   3'- uUUGCU------UGCGCCaGCGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 3261 0.67 0.956728
Target:  5'- -cGCGGGCuCGGUCcCGUCGcuGCGUCg -3'
miRNA:   3'- uuUGCUUGcGCCAGcGCAGCc-UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 4217 0.69 0.869748
Target:  5'- gGAGCGGcCGCGGggaGCG--GGACGUCg -3'
miRNA:   3'- -UUUGCUuGCGCCag-CGCagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 4451 0.67 0.956728
Target:  5'- --cCGGGCGCGG--GgGUCGG-CGUCg -3'
miRNA:   3'- uuuGCUUGCGCCagCgCAGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 5076 0.67 0.956728
Target:  5'- -cGCG-GCGuUGGUCGuCGUCGccGGCGUCg -3'
miRNA:   3'- uuUGCuUGC-GCCAGC-GCAGC--CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 7366 0.66 0.966803
Target:  5'- -cGCGAcgGCGGcCGCGgCGGGCGg- -3'
miRNA:   3'- uuUGCUugCGCCaGCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 8420 0.66 0.969759
Target:  5'- gGAACGcgcacCGCGGcCG-GUCGGACGa- -3'
miRNA:   3'- -UUUGCuu---GCGCCaGCgCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 10425 0.66 0.96365
Target:  5'- -cACGAcCGCGucGUCGcCGUCGGGCa-- -3'
miRNA:   3'- uuUGCUuGCGC--CAGC-GCAGCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 10598 0.68 0.914781
Target:  5'- cGACGAA-GCGGgccacgGCGUCGG-CGUCc -3'
miRNA:   3'- uUUGCUUgCGCCag----CGCAGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 11087 0.66 0.972521
Target:  5'- gGAGCGGACgGCGGUgucgucCGCcUCGGccuCGUCc -3'
miRNA:   3'- -UUUGCUUG-CGCCA------GCGcAGCCu--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 11349 0.7 0.839511
Target:  5'- gAGGCGAgaGCGCaaacuguUCGCGUCGGACGa- -3'
miRNA:   3'- -UUUGCU--UGCGcc-----AGCGCAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 11425 0.69 0.876818
Target:  5'- gAGAUGAcCGCGGUcCGCGgggacgccgCGGACGg- -3'
miRNA:   3'- -UUUGCUuGCGCCA-GCGCa--------GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 12001 0.67 0.95295
Target:  5'- cGACG-ACGCGGcCGCcgaucUCGGACG-Cg -3'
miRNA:   3'- uUUGCuUGCGCCaGCGc----AGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 14963 0.72 0.73367
Target:  5'- aGGACGAAcCGCGGcCGCGgUGGACG-Cg -3'
miRNA:   3'- -UUUGCUU-GCGCCaGCGCaGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 15459 0.67 0.95295
Target:  5'- uAGACGGggACGCGGUC-C-UCGGGCG-Cg -3'
miRNA:   3'- -UUUGCU--UGCGCCAGcGcAGCCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 18838 0.66 0.972521
Target:  5'- cGAGCGAGCGgaGGUaGCGggGGACGg- -3'
miRNA:   3'- -UUUGCUUGCg-CCAgCGCagCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 19376 0.68 0.914781
Target:  5'- cGGCGGccuCGCGcUCGCGUCGGGCc-- -3'
miRNA:   3'- uUUGCUu--GCGCcAGCGCAGCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 21052 0.69 0.902999
Target:  5'- gGAACG-GCGCGG-CGCGUgaGGGCG-Ca -3'
miRNA:   3'- -UUUGCuUGCGCCaGCGCAg-CCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 24309 0.7 0.839511
Target:  5'- gGGGCGAACuGCGGUCccccgGCGgUCGGGCuGUUg -3'
miRNA:   3'- -UUUGCUUG-CGCCAG-----CGC-AGCCUG-CAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.