miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 228567 0.69 0.890336
Target:  5'- cGGACGcuuccuuacCGCGGUCGUGUCGG-CGg- -3'
miRNA:   3'- -UUUGCuu-------GCGCCAGCGCAGCCuGCag -5'
9101 3' -55.5 NC_002512.2 + 227227 0.68 0.930775
Target:  5'- cGGCGGAC-CGGgaggCGCGgCGGACGg- -3'
miRNA:   3'- uUUGCUUGcGCCa---GCGCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 226762 0.67 0.956728
Target:  5'- cGGACG-ACGCGGaggGCGa-GGACGUCu -3'
miRNA:   3'- -UUUGCuUGCGCCag-CGCagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 224204 0.67 0.95295
Target:  5'- -cACGGACGCGGggaCGCcg-GGGCGUUu -3'
miRNA:   3'- uuUGCUUGCGCCa--GCGcagCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 224022 0.67 0.947717
Target:  5'- cGGACGAcgcccgggacuccgACGgGGcCGCcggggacgacucGUCGGGCGUCu -3'
miRNA:   3'- -UUUGCU--------------UGCgCCaGCG------------CAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 223916 0.66 0.966803
Target:  5'- -cGCGGGCGagaGGUCGaGcCGGACGg- -3'
miRNA:   3'- uuUGCUUGCg--CCAGCgCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 223821 0.69 0.883682
Target:  5'- gGGACG-ACGaCGG-CGCGUCGGAgGg- -3'
miRNA:   3'- -UUUGCuUGC-GCCaGCGCAGCCUgCag -5'
9101 3' -55.5 NC_002512.2 + 223765 0.67 0.935656
Target:  5'- cGACGAcaGCGaGGUCGaGggacCGGACGUCg -3'
miRNA:   3'- uUUGCU--UGCgCCAGCgCa---GCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 219467 0.7 0.862477
Target:  5'- cGGCGAcgACGCGGUCGUGccccUgGGGCGg- -3'
miRNA:   3'- uUUGCU--UGCGCCAGCGC----AgCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 218102 0.68 0.930275
Target:  5'- gAAGCGGGCGUcgcgcccggGGUCGC-UCGGguagaacACGUCg -3'
miRNA:   3'- -UUUGCUUGCG---------CCAGCGcAGCC-------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 216809 0.68 0.909001
Target:  5'- uGACGAugGC-GUCGCGggUCGGguacggcuGCGUCu -3'
miRNA:   3'- uUUGCUugCGcCAGCGC--AGCC--------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 216023 0.71 0.803856
Target:  5'- uGAGCGuAGCGCGGUauagggcgcgcgagUGCGaCGGGCGUUc -3'
miRNA:   3'- -UUUGC-UUGCGCCA--------------GCGCaGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 215188 0.67 0.944312
Target:  5'- gGAGCGGACGCGGgucuaccucuucgUCgGCGgggCGGACa-- -3'
miRNA:   3'- -UUUGCUUGCGCC-------------AG-CGCa--GCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 208421 0.67 0.938477
Target:  5'- -uACGGGCGCcgcucccGG-CGCcggcccccgaucgaGUCGGACGUCg -3'
miRNA:   3'- uuUGCUUGCG-------CCaGCG--------------CAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 207928 0.66 0.96365
Target:  5'- cGAACGGGCcCGGUgGUGcUCGGGucCGUCc -3'
miRNA:   3'- -UUUGCUUGcGCCAgCGC-AGCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 205495 0.67 0.935656
Target:  5'- gAGGCGGACGaCGGcgUCGCGgaGGACGa- -3'
miRNA:   3'- -UUUGCUUGC-GCC--AGCGCagCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 202519 0.66 0.960293
Target:  5'- gAGGCGGAgGCGG-CgGCGggggCGGACGa- -3'
miRNA:   3'- -UUUGCUUgCGCCaG-CGCa---GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 201683 0.69 0.892938
Target:  5'- cGGCGAGgGCGGcCGCGUcuggugcgggaucggCGGcgGCGUCg -3'
miRNA:   3'- uUUGCUUgCGCCaGCGCA---------------GCC--UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 200841 0.69 0.896776
Target:  5'- cAGCGGggGCGCGG-CGCGUCucugccgcauGGCGUCg -3'
miRNA:   3'- uUUGCU--UGCGCCaGCGCAGc---------CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 200751 0.74 0.645659
Target:  5'- --cCGGGCGUGGUCGuCGUacaUGGugGUCg -3'
miRNA:   3'- uuuGCUUGCGCCAGC-GCA---GCCugCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.