miRNA display CGI


Results 21 - 40 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 3' -55.5 NC_002512.2 + 223916 0.66 0.966803
Target:  5'- -cGCGGGCGagaGGUCGaGcCGGACGg- -3'
miRNA:   3'- uuUGCUUGCg--CCAGCgCaGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 129650 0.66 0.960293
Target:  5'- ---aGGACGCGGUCGCcgcccGUC-GACGcCg -3'
miRNA:   3'- uuugCUUGCGCCAGCG-----CAGcCUGCaG- -5'
9101 3' -55.5 NC_002512.2 + 183959 0.66 0.96365
Target:  5'- ---gGGACGCG--CGC-UCGGGCGUCg -3'
miRNA:   3'- uuugCUUGCGCcaGCGcAGCCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 124312 0.66 0.972521
Target:  5'- gGAGCuGAuCGgGGcCGCGgCGGACGUg -3'
miRNA:   3'- -UUUG-CUuGCgCCaGCGCaGCCUGCAg -5'
9101 3' -55.5 NC_002512.2 + 127636 0.66 0.969759
Target:  5'- cGAGCGAAagggauCG-GGUCGC-UCGGACGg- -3'
miRNA:   3'- -UUUGCUU------GCgCCAGCGcAGCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 207928 0.66 0.96365
Target:  5'- cGAACGGGCcCGGUgGUGcUCGGGucCGUCc -3'
miRNA:   3'- -UUUGCUUGcGCCAgCGC-AGCCU--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 119763 0.66 0.966803
Target:  5'- cGAGCGAcgcguCGCGGUCGaCGgCGGGgacccagaacCGUCu -3'
miRNA:   3'- -UUUGCUu----GCGCCAGC-GCaGCCU----------GCAG- -5'
9101 3' -55.5 NC_002512.2 + 11087 0.66 0.972521
Target:  5'- gGAGCGGACgGCGGUgucgucCGCcUCGGccuCGUCc -3'
miRNA:   3'- -UUUGCUUG-CGCCA------GCGcAGCCu--GCAG- -5'
9101 3' -55.5 NC_002512.2 + 151838 0.66 0.972521
Target:  5'- cGGAUGAAUGCccgCGUGUCGGACa-- -3'
miRNA:   3'- -UUUGCUUGCGccaGCGCAGCCUGcag -5'
9101 3' -55.5 NC_002512.2 + 108335 0.67 0.944746
Target:  5'- cGGGCGGucgGCGCGGcaugCGCGgaCGGACGg- -3'
miRNA:   3'- -UUUGCU---UGCGCCa---GCGCa-GCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 37470 0.67 0.939857
Target:  5'- aGAACGAGaC-CGGaCGCGUCGGaaggacgguaaacGCGUCu -3'
miRNA:   3'- -UUUGCUU-GcGCCaGCGCAGCC-------------UGCAG- -5'
9101 3' -55.5 NC_002512.2 + 98105 0.67 0.944746
Target:  5'- gGGACG-GCGCGGgacgaccucgUCGCGcUCuGGACGUUc -3'
miRNA:   3'- -UUUGCuUGCGCC----------AGCGC-AG-CCUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 129850 0.67 0.948957
Target:  5'- gAGGCGGAgGCGGagGCGgaGGACGg- -3'
miRNA:   3'- -UUUGCUUgCGCCagCGCagCCUGCag -5'
9101 3' -55.5 NC_002512.2 + 31808 0.67 0.948957
Target:  5'- gAGACGccggGGCGCGGUcgaggggaCGCG-CGaGACGUCc -3'
miRNA:   3'- -UUUGC----UUGCGCCA--------GCGCaGC-CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 45382 0.67 0.955617
Target:  5'- cGACGAggACGCGGgccgggacugucgcUCGUG-CGGGCGcUCg -3'
miRNA:   3'- uUUGCU--UGCGCC--------------AGCGCaGCCUGC-AG- -5'
9101 3' -55.5 NC_002512.2 + 75201 0.67 0.95295
Target:  5'- cGGACGGcCGCucggagccggacGGUCGCccgacGUCGGACGgUCg -3'
miRNA:   3'- -UUUGCUuGCG------------CCAGCG-----CAGCCUGC-AG- -5'
9101 3' -55.5 NC_002512.2 + 5076 0.67 0.956728
Target:  5'- -cGCG-GCGuUGGUCGuCGUCGccGGCGUCg -3'
miRNA:   3'- uuUGCuUGC-GCCAGC-GCAGC--CUGCAG- -5'
9101 3' -55.5 NC_002512.2 + 133796 0.67 0.956728
Target:  5'- cGGCGGggACGaCGGUCGCGcCGGguGCGg- -3'
miRNA:   3'- uUUGCU--UGC-GCCAGCGCaGCC--UGCag -5'
9101 3' -55.5 NC_002512.2 + 4451 0.67 0.956728
Target:  5'- --cCGGGCGCGG--GgGUCGG-CGUCg -3'
miRNA:   3'- uuuGCUUGCGCCagCgCAGCCuGCAG- -5'
9101 3' -55.5 NC_002512.2 + 82708 0.67 0.95295
Target:  5'- -uGCGcGGCGCGGgccCGCGUucCGG-CGUCu -3'
miRNA:   3'- uuUGC-UUGCGCCa--GCGCA--GCCuGCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.