miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9101 5' -60 NC_002512.2 + 51170 0.66 0.853467
Target:  5'- uCGAAAcuGGGccuGGCCaGCaacgCGGCGGCCg -3'
miRNA:   3'- -GCUUU--CCC---UCGG-CGcua-GCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 142029 0.66 0.853467
Target:  5'- gCGGccGGGGGCCgGCGAcccgccgCGaG-GGCCCg -3'
miRNA:   3'- -GCUuuCCCUCGG-CGCUa------GC-CgCCGGG- -5'
9101 5' -60 NC_002512.2 + 41082 0.66 0.853467
Target:  5'- uGAAguAGcc-GCCGCGAUCGG-GGCCg -3'
miRNA:   3'- gCUU--UCccuCGGCGCUAGCCgCCGGg -5'
9101 5' -60 NC_002512.2 + 91240 0.66 0.853467
Target:  5'- uCGucAGGGAcGCCGCGuaCGGgGagauGCCCg -3'
miRNA:   3'- -GCuuUCCCU-CGGCGCuaGCCgC----CGGG- -5'
9101 5' -60 NC_002512.2 + 154270 0.66 0.851995
Target:  5'- gCGGAGGGGAGCCGaagcgucagaaaaCGcAUCacgauccgaggguGGCGGaCCg -3'
miRNA:   3'- -GCUUUCCCUCGGC-------------GC-UAG-------------CCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 204728 0.66 0.84903
Target:  5'- cCGGGgcGGGGGGCCggacccgggugcucaGCGAUCc-CGGCCUg -3'
miRNA:   3'- -GCUU--UCCCUCGG---------------CGCUAGccGCCGGG- -5'
9101 5' -60 NC_002512.2 + 130524 0.66 0.846788
Target:  5'- gGAGAGcucGGGUCGCGGgaacaugccggacaGGCGGUCCg -3'
miRNA:   3'- gCUUUCc--CUCGGCGCUag------------CCGCCGGG- -5'
9101 5' -60 NC_002512.2 + 229538 0.66 0.846037
Target:  5'- aGAAcgccGGGGAGCCG-GG-CGG-GGCgCCg -3'
miRNA:   3'- gCUU----UCCCUCGGCgCUaGCCgCCG-GG- -5'
9101 5' -60 NC_002512.2 + 127036 0.66 0.846037
Target:  5'- cCGGucGGGAuaCGCGuaCGGCGGCg- -3'
miRNA:   3'- -GCUuuCCCUcgGCGCuaGCCGCCGgg -5'
9101 5' -60 NC_002512.2 + 155631 0.66 0.846037
Target:  5'- uGcGAGGaGAGCCgGCGGcgcuUCGGCGuccggccguucGCCCc -3'
miRNA:   3'- gCuUUCC-CUCGG-CGCU----AGCCGC-----------CGGG- -5'
9101 5' -60 NC_002512.2 + 118075 0.66 0.846037
Target:  5'- gCGGAGGGGgcGGCUccgGCGc-CGGCGGCgaCCg -3'
miRNA:   3'- -GCUUUCCC--UCGG---CGCuaGCCGCCG--GG- -5'
9101 5' -60 NC_002512.2 + 190422 0.66 0.846037
Target:  5'- ----cGGGGGCUGCGGga-GCGGgCCg -3'
miRNA:   3'- gcuuuCCCUCGGCGCUagcCGCCgGG- -5'
9101 5' -60 NC_002512.2 + 75339 0.66 0.846037
Target:  5'- uCGAGGcGGGcgcuCCG-GAUUGGuCGGCCCg -3'
miRNA:   3'- -GCUUU-CCCuc--GGCgCUAGCC-GCCGGG- -5'
9101 5' -60 NC_002512.2 + 220304 0.66 0.846037
Target:  5'- cCGAGccgccGGGGGGCCGgGGgccgggcucCGGgGGgCCg -3'
miRNA:   3'- -GCUU-----UCCCUCGGCgCUa--------GCCgCCgGG- -5'
9101 5' -60 NC_002512.2 + 120751 0.66 0.846037
Target:  5'- cCGGgcGGcGAGUC-CGAcgugcuggacUCGGCGGCCg -3'
miRNA:   3'- -GCUuuCC-CUCGGcGCU----------AGCCGCCGGg -5'
9101 5' -60 NC_002512.2 + 98721 0.66 0.838437
Target:  5'- gCGAGAacGGGcucGGCCGCuuccucUCGGCcGCCCu -3'
miRNA:   3'- -GCUUU--CCC---UCGGCGcu----AGCCGcCGGG- -5'
9101 5' -60 NC_002512.2 + 72781 0.66 0.838437
Target:  5'- cCGGGAGGGAcgucGCCGgGA-CGG--GCCCg -3'
miRNA:   3'- -GCUUUCCCU----CGGCgCUaGCCgcCGGG- -5'
9101 5' -60 NC_002512.2 + 157160 0.66 0.838437
Target:  5'- gCGgcGGGccGGGCgGCGugggCGGCGGCgCg -3'
miRNA:   3'- -GCuuUCC--CUCGgCGCua--GCCGCCGgG- -5'
9101 5' -60 NC_002512.2 + 6406 0.66 0.838437
Target:  5'- aGGGAGGcGGCgGCGGcgcuggggaaGGCGGCCg -3'
miRNA:   3'- gCUUUCCcUCGgCGCUag--------CCGCCGGg -5'
9101 5' -60 NC_002512.2 + 203321 0.66 0.838437
Target:  5'- gCGuaguAGGccaGGGCCGCGAUCuuGCaGCCCu -3'
miRNA:   3'- -GCuu--UCC---CUCGGCGCUAGc-CGcCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.